KEGG   Runella slithyformis: Runsl_1821
Entry
Runsl_1821        CDS       T01553                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
rsi  Runella slithyformis
Pathway
rsi03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:rsi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Runsl_1821
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:rsi03021]
    Runsl_1821
   03400 DNA repair and recombination proteins [BR:rsi03400]
    Runsl_1821
Enzymes [BR:rsi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Runsl_1821
Transcription machinery [BR:rsi03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Runsl_1821
DNA repair and recombination proteins [BR:rsi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Runsl_1821
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Apocytochr_F_C RPOC_hybrid Peptidase_M23 Biotin_lipoyl RnfC_N
Other DBs
NCBI-ProteinID: AEI48245
UniProt: A0A7U3ZJB2
Position
2065709..2070079
AA seq 1456 aa
MLSKIIFTKTISEMSFKKNKKINSDFSRITISLASPESILESSYGEVTQPETINYRTYKP
EMGGLFCERIFGPVKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPV
AHIWYFRSLPNKIGYLLGLSTKKLDQIIYYERYVVVQPGIKAEDGVNKMDFLTEDEYLDI
VDKLPRENQMLPDTDPNKFIAKMGADGLEMLLSRTQLDELSYELRHNAANDTSQQRKAEA
LKRLKVVEALRDANTRIENRPEWMVIRMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVI
IRNNRLKRLIEIKAPEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKG
KQGRFRQNLLGKRVDYSGRSVIVVGPELKLHECGLPKDMAAELFKPFIIRKLIERGIVKT
VKSAKKIVDRKDPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLV
CTAFNADFDGDQMAVHVPLGQEAVLEASMLMLSSHNILNPANGAPITVPSQDMVLGLYYV
TKGRKSTPEIPIVGEGGIFYGADEVIIAINEGKLSKHAHIKCRVTVRNEDGSLEKKLVDT
VAGRVLFNQFVPESVGYINELLTKKKLQQIIGHVFKIAGNARCAQFLDEIKHLGFQTAFK
GGLSIGLGDIKIPDEKWQLIDGAKGEVQGVMDNFMMGLITENERYNQIIDVWTRTNTKLA
NTLLTQLENDQQGFNSVYMMMHSGARGSREQVRQLGGMRGLMAKPQKNLAGGVGEIIENP
ILSNFKEGLDVLEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVVVNEEDCGTLR
GIEISALKDNEDIVEPLAERILGRVSVHDILDPLTGELIIASGSEITEEIASRIDETSIE
AVEIRSVLTCETRNGVCSKCYGRNLASGRMAENGEAVGVIASQSIGEPGTQLTLRTFHVG
GVAQNIAQEASIKTKFDGKVEFEDMRTVDSTDNDGNPATIVMGRSGEIRIISETNGQVLI
ANNVPYGATLLVKEGQKVTKGQELCNWDPYNAVILSEFNGVIEYEAIEEGITFREEIDEQ
SGFQEMVIIESRDRTKNPGILVKGKSPLLTDIEEKIYNLPVGARLVIKDGAVVRTGQALA
KIPRTLGKTRDITGGLPRVTELFEARNPSNPAVVSEIDGVVIYGIIKRGNREINIESKDG
TRKKYLVPLSKHILVQDGDYVKAGEPLSDGAITPSDILSIKGPTAVQEYLVNEIQEVYRL
QGVKINDKHIECIVRQMMQKVEIMDPGDTNFLEMQAVDKWTFREENDRVLDMKVVEDAGD
SESLKPGMLISARRLRDENSTLKRRDQRLVTARDAKPAVAQPTLMGITQASLGTESFISA
ASFQETTKVLSEAAVRGKRDTLEGLKENVIVGHLIPAGTGARRYQKLIIGSKEDLETVTE
SRERSSSRRSKRELAN
NT seq 4371 nt   +upstreamnt  +downstreamnt
atgctttcaaaaatcattttcacaaaaacaatatccgaaatgtcattcaagaaaaacaag
aaaatcaatagtgacttttcgcggattaccatcagcttggcgtcgccggagtctatcttg
gagagctcttatggcgaggtaacccagccggagaccatcaattatcggacgtacaaacct
gaaatgggcggacttttctgcgagcgcatctttgggccggtaaaagactgggaatgtcac
tgtggtaaatataagcgcattcgttacaagggtattatttgcgaccgttgcggagtagag
gtaacggagaaaaaagtacgccgtgaacggatgggacacatcgaattggtggtgcccgta
gctcatatttggtatttccgtagcttgccaaacaaaatcggttacctcttgggcctttct
accaagaaattggaccaaatcatttattacgagcgttatgtagttgttcagccgggtatt
aaagcggaagatggagtcaataaaatggacttcctgaccgaagatgaatacctggacatc
gtggacaaactgccgcgtgaaaaccaaatgttgcctgacaccgatccgaacaaattcatc
gctaagatgggtgccgacgggttggaaatgttattgtcgcgtacacaattggatgaattg
tcttatgaactgcgccacaacgcagccaatgatacctcacaacagcgtaaagcggaagcg
ctgaagcgtctgaaagtagtggaagcccttcgtgatgccaatacccgtatcgaaaaccgt
cccgagtggatggtaatccgtatggtgcccgtgattccaccggaattgcgtccattggtg
ccgttggatggcggtcgttttgctacctccgacttaaatgacctgtatcgtcgcgtgatc
attcgtaacaaccgtttgaagcgtttgatcgagatcaaagcacctgaggtgatcttgcgt
aacgaaaaacggatgttgcaggaagcggttgactcattatttgacaacagccgaaaagtg
aacgccgttcgttccgaaggtaaccgtgctttgaaatccctttccgatatgttgaaagga
aagcagggccgtttccgtcaaaacttattgggtaaacgtgttgactactccggtcgttcg
gtaatcgtggtaggtcctgagctcaaattgcacgagtgcggacttcccaaagacatggcg
gcagagttattcaaaccgtttattatccgtaaactgatcgaacgcggaatcgtaaaaacg
gtaaaatcagcgaagaaaatcgttgaccgcaaagaccccgtcgtatgggatatcttggaa
aacgtgttgaaagggcaccctgtgttgctcaaccgtgctccaaccctgcaccgtttgggt
attcaggcgttccaacctaagttgatcgaaggaaaagccattcagctacacccactcgtc
tgtacagccttcaacgccgactttgacggtgaccagatggcggttcacgtaccgctgggc
caggaagcggtgttggaagcatctatgctgatgctttcgtcacacaacatcctgaaccct
gccaacggcgcgccgatcaccgtaccttcacaagacatggtattgggcttgtattacgtg
accaaaggacgtaagtcaacgcccgagattcctatcgttggagagggaggtatattttat
ggagcagacgaggtcatcattgccatcaacgaaggcaagctgtctaaacatgctcatatt
aaatgccgcgtgacggttcgtaacgaagatggttcgctggagaagaaattggtcgatacc
gttgccggtcgagtacttttcaaccagtttgtgcctgaatcggtaggatacatcaatgaa
ttgttgacaaagaaaaaattgcagcaaatcatcggtcacgtattcaaaattgcgggtaac
gcgcgttgtgctcagttcctggatgaaatcaagcacttaggtttccagactgccttcaaa
ggtgggttgtcgatcggtttgggtgatatcaagatccctgacgaaaaatggcagcttatt
gacggagccaaaggcgaagttcagggtgtgatggacaacttcatgatgggtctgatcacg
gaaaacgagcgatataaccagattattgacgtttggacgcgtaccaacaccaagttggcc
aacacgctcctgacgcaattggaaaatgaccaacagggattcaactcagtatatatgatg
atgcactcgggagcacgcggttctcgggagcaggtacgtcagttggggggtatgcgcggt
ctgatggctaagcctcagaaaaacctggcgggtggcgtaggagagatcattgaaaacccg
atcctgtcaaactttaaagaaggtcttgacgtattggagtactttatctctacccacggt
gcacgtaaaggtttggcggataccgctttgaaaacggccgatgcaggttacctgacgcgt
cgtttgcacgatgtggcacaggatgtagttgtcaacgaagaagattgcggtaccctgcgc
ggtattgagatctcggcgttaaaagacaacgaagacatcgttgagccattggcagaacgt
attctgggtcgtgtatcggttcatgatattttagatccgcttaccggggagctgattatc
gcctccggaagtgaaatcacggaagaaattgcatctcgcatcgacgaaaccagcatcgaa
gccgttgaaatccgctcagtattgacctgcgaaacccgcaacggggtttgctcaaaatgc
tatggacgcaacctggcttcgggacgtatggccgaaaatggtgaagcggttggggtaatt
gcctcacagtccatcggtgagccgggtacgcagctgacccttcgtactttccacgtgggt
ggggttgcgcaaaatattgcgcaggaagcctccattaaaaccaaatttgacggtaaagtg
gaatttgaggacatgcgtacggtagactccactgataatgacggaaaccctgcgaccatc
gtaatgggacgttcgggtgaaattcgcatcatcagtgagactaacggacaggtgttgatc
gccaacaacgtaccttacggggctacattgttggtaaaagaaggacaaaaagtaaccaaa
ggacaggaactttgtaactgggatccgtacaacgccgttatcttatcagaatttaacggg
gtgatcgaatacgaagcgatcgaagaagggattaccttccgtgaagaaatcgacgagcag
tcgggcttccaggaaatggtaatcatcgaaagtcgtgaccgtactaagaacccgggtatt
ttggtgaaagggaaaagtccgcttttgaccgatatcgaagagaagatctataacttaccg
gtaggtgcccgtttggtaatcaaagacggtgccgtggtgagaacaggtcaggccttggcg
aaaattccgcgtacgttgggtaaaacccgcgatattacgggaggtttgccacgggtaacg
gaattgtttgaagcccgtaacccgtctaaccctgcggttgtatctgaaatcgacggggtg
gttatttacggtattatcaaacgcggtaaccgtgagatcaacatcgagtcgaaagacggt
actcgtaaaaaataccttgtgccgttgtcgaaacacattctggtacaggacggtgactac
gtaaaagccggtgagccgctttcagacggagctatcacaccgagtgatattctttccatc
aaagggccaaccgctgtacaggagtacctcgttaacgaaatccaggaggtttaccgctta
cagggggtaaaaatcaacgataagcatattgagtgtatcgtacgccagatgatgcagaag
gttgaaattatggatccgggcgatactaacttcctcgaaatgcaggccgtagataagtgg
acattccgcgaagaaaacgaccgcgttcttgacatgaaggtagtggaagatgccggcgat
tcagaatcccttaagccgggtatgttgatttcagcacgtcgtttgcgtgacgaaaactca
accctcaagcgtcgtgaccaacgtttggtgacggcccgtgatgccaaacctgcggtggct
caacctacgctgatgggtattacgcaggcgtctttgggtacggaaagctttatctctgcg
gcgtcgttccaggaaacgaccaaagtattgagcgaagcggccgtacgcggaaaacgcgat
accctcgaaggcctgaaggaaaacgtgatcgtaggtcacctgattccggccggtacagga
gcccgtcgttaccagaagctcatcatcggttcgaaagaagacctcgaaacagtgactgag
tcacgcgaacgcagcagttcacgccgcagcaaacgcgaattagcgaattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (42)   
   KEGG ORTHOLOGY (1)   
   RefGene (39)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (10)   
   Pfam (10)   
All databases (60)   

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