KEGG T01553: Runsl

Runella slithyformis: Runsl_3003

Entry

Runsl_3003 CDS T01553

Definition

2-oxoglutarate dehydrogenase E1

Orthology

K00164

2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]

Organism

rsi Runella slithyformis

Pathway

rsi00020	Citrate cycle (TCA cycle)
rsi00310	Lysine degradation
rsi00380	Tryptophan metabolism
rsi01100	Metabolic pathways
rsi01110	Biosynthesis of secondary metabolites
rsi01120	Microbial metabolism in diverse environments

Class

Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:rsi00020]
Metabolism; Amino acid metabolism; Lysine degradation [PATH:rsi00310]
Metabolism; Amino acid metabolism; Tryptophan metabolism [PATH:rsi00380]

SSDB

Motif

Pfam:

Transket_pyr E1_dh NYD-SP28_assoc

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

3497152..3499926

AA seq 924 aa
MEKYSYIANSEAAYIEDLYQKYLQQPDSVDLSWQRFFEGFEFSAKYGENKPKVNGNGAAP
APAETSHSVSHTRKEMEVVHLIRGYRQRGHLMAQTNPLGPRKNRHPELDLKDFNLADADL
DTVFEAGVEVFGRAAKLREIVDALRKVYTEKVGFEYQYIRDRRAKSWLRKKIEQEYLNFN
PTIEQKKRILEKLNDAVTFENFLHTKFLGKKRFSLEGGESTIPALDVVINRGAELGVEEV
VIGMAHRGRLNVLTNILQKPYEQVFNEFEENVELDEFSDGDVKYHMGYESQIETPEGKRV
SLKLMANPSHLEAVNPAVVGYARARADEHYNHVQGQDKYDPILPILIHGDAAVAGQGIVY
EVTQMSNLPAYYTGGTLHFVINNQIGFTTDHEDDRSSIYCSDIARIVDAPIFHVNGNDPE
AVAFVMKVAIEFRQEFNRDVFVDMVCYRKYGHNESDEPRFTQPTMYSKIAKQLNGRDLYL
KVLTERGELDAQIADQMKAELEGELQDLLQKVKQKQLPYKRPKLERDWAELRRSVPEDFE
KSPATGISKEVIDKVGKAISSIPEGFKVLKQIEKVLEERKQIFAGEKPLNWSAGELLAYG
SILAEGKTVRMTGQDVQRGTFSHRHAVLHDAETNANHNSLAYIGEGQGKFEIYNSLLSEY
GVMGFEYGYAMANPHALVIWEAQFGDFVNGAQIMIDQFIAATESKWNAMNGLILLLPHGY
EGQGPEHSSARPERFLILSAEYNMYVCNITTPANYFHMIRRQLALPYRKPAILMSPKSML
RHPMAVSPLSDFAEGTSFQETIGDSFAEPKKVKKVLLCTGKLYWELLDKQQKDNRKDVAI
IRVEQLYPFPKKQVEAYLAQYKKAEILWVQEEPENMGYWSFILREFPEIGLGKVIARKAS
ASPATGYMKIHAKEQAELIEQAFS

NT seq 2775 nt +upstreamnt +downstreamnt
atggaaaaatactcatatatagctaattcagaagctgcgtacattgaggacctgtaccaa
aaatacttgcaacaacccgattctgtcgatttaagttggcaacggttctttgaaggtttt
gaattttctgctaaatacggcgaaaataagcctaaagtaaacggcaacggtgccgccccg
gcacccgctgaaacctcccattccgtttcacatacccgtaaagaaatggaggtggtccac
ttgatcagaggctaccgtcaacgtggacatttgatggcgcagactaacccgctgggcccg
cgcaagaatcgtcatcccgagttggacttaaaagattttaacttagcggatgccgactta
gacacggtgtttgaagcaggagttgaagtatttggccgcgcggcaaaactgcgcgaaatc
gtcgatgcacttcgcaaagtctataccgaaaaggtgggttttgaataccaatacattcgt
gaccgtcgtgcaaaaagttggctgcgcaaaaaaattgagcaggagtatctcaactttaac
cctaccattgagcaaaagaaacgtattcttgaaaagctgaatgatgccgtaacgttcgag
aacttcctgcataccaagtttttgggtaagaaaaggttttcactggaaggcggagagtcg
accattccggcgttggatgtggtcatcaaccgaggagcggaactgggcgtagaagaagta
gtgatcggaatggcccaccgcggtcgtttgaatgtattgaccaatattcttcaaaaaccg
tacgagcaggtatttaacgagtttgaggaaaacgttgaactggatgagttcagtgacggc
gacgtaaaataccatatgggctacgaaagtcagatcgaaacgcccgaaggaaaacgtgtc
agtctcaaattgatggccaatccgtcgcacctggaagccgtgaatccggccgtggttgga
tacgcccgcgctcgtgccgacgaacactacaatcacgtacagggacaggataaatacgat
cccatactgccaatcctgattcacggtgatgccgccgtggcaggacagggaattgtgtat
gaagtaacccagatgtcaaatctgccggcctattacacgggcggtaccctgcattttgtg
atcaacaaccaaatcgggtttaccaccgatcacgaagacgaccgctcttccatctactgt
tcagacattgccagaatcgttgatgcgcctatttttcacgtcaacggcaatgatccggaa
gcggttgcttttgtaatgaaggtagccattgagtttcggcaggagtttaaccgtgatgta
tttgtagatatggtttgctaccgcaaatacggccacaatgagtcggatgagccgcgtttt
acgcaaccgaccatgtactcaaaaatagcgaaacagctcaacggaagagatttatactta
aaagtattgacggagagaggagaattggatgcccagattgccgatcaaatgaaggccgaa
ctggaaggggaattgcaggatttactccaaaaagtaaaacaaaagcaacttccgtacaaa
cgcccgaaactcgaacgtgactgggccgaattgcgccgctctgtgccggaagattttgaa
aaatcaccggcgaccggcatttccaaagaggtgattgataaagtaggaaaagcgatctca
agcataccggaaggcttcaaagtattgaagcagattgaaaaagtactggaggaacgtaag
cagatctttgcgggtgaaaaaccgctgaactggtcggcgggcgaactgttggcctatggt
tctatcctggccgaagggaagacggtccgtatgaccgggcaggacgtgcagcggggaacc
ttctcgcaccgtcatgccgtattgcacgatgctgaaaccaacgccaatcacaacagttta
gcttatatcggtgaaggacagggtaaatttgagatatacaactcattgctttctgagtac
ggggtcatgggttttgaatatggctacgccatggccaacccccacgccttggtcatttgg
gaagctcaattcggtgattttgtcaatggtgcccaaatcatgatcgaccagtttattgcc
gccactgaatcaaagtggaatgccatgaatgggttgatattgctgttgcctcacggatac
gaagggcaggggcctgagcactcaagtgcacgtcccgagcggtttttgattctgtcagca
gagtataatatgtatgtttgtaacattacaacgccggccaactacttccacatgatacgt
cgtcagttggcattgccttacagaaagccggccatactgatgtcaccaaaatcaatgctg
cgtcatccgatggcagtatccccgctgagtgattttgccgaaggaacttcgtttcaggaa
accatcggagattcatttgctgaacctaaaaaggtgaaaaaggtgttgctttgtaccggc
aagctttattgggagttgttggataaacaacaaaaagacaaccgtaaagatgtggccatt
attcgtgtagagcaattgtatccgttccctaaaaaacaggtggaagcctacttggcccaa
tacaaaaaagccgagattctttgggtacaggaagaaccggaaaatatgggctactggtcc
tttattttgcgggagtttcccgaaatcggcttaggaaaagtgattgcccgtaaagccagt
gcttccccggccaccggttatatgaaaatacacgccaaagagcaggccgaactgatcgag
caggctttttcttaa

All links

Pathway (6)   
   KEGG PATHWAY (6)   
Chemical substance (13)   
   KEGG COMPOUND (13)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RSI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (35)   

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