KEGG T00284: RSP

Rhodobacter sphaeroides 2.4.1: RSP_2413

Entry

RSP_2413 CDS T00284

Gene name

lig2

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rsp Rhodobacter sphaeroides 2.4.1

Pathway

rsp03410	Base excision repair
rsp03420	Nucleotide excision repair
rsp03430	Mismatch repair
rsp03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rsp03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rsp03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rsp03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rsp03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:complement(1043632..1045233)

AA seq 533 aa
MKRFAALFDLLDRTTRTSAKVAALADYFRTAPEEDRVWTIGLLSGRRPKRAVNTTELRSW
AAEASGLPVWLAEEVHPIVGDLAETISLLLPEPSQTSDRTLDGWMRELVSLTGRPAEVRR
AAILDAWDRLSTPERFLFNKLITGGFRMGVSQGLMTRALAQATGVDEAVLAHRLMGDWKP
SRIGFETLIGAHDPEADASKPYPFALASPVEEVAALGDPADWLAEWKWDGIRGQLVNRAG
AFALWSRGEELVTDRFPDLAPLRDFLPPGLVIDAEVLAWGGEGPLPFAALQKRIGRLTVP
KKILAEAPAHLLAYDLLEENGEDLRAAPLAHRRARLEAVLSALPPGVPISPSPLVAFDDW
ETLGEIRATAREKIAEGLMLKRASSPYFVGRKRGDWWKWKLDPYTVDAVMLYAQQGAGRR
ATLFTDFTFGVRDGDDLVPFTKAYSGLTDAEFRQITDWVRKNTLERFGPVRRVPPELVFE
LAFEGIQASPRHKSGIALRFPRMVRWRKDKPAAEIDTLESLRELLAATGGAAP

NT seq 1602 nt +upstreamnt +downstreamnt
atgaagcggttcgcggccctcttcgacctgctcgaccgcacgacgcgcacctccgcgaag
gtggcggcgctcgccgactatttccgcaccgcgcccgaggaggaccgggtctggaccatc
ggcctcctctcgggccgccgccccaagcgggcggtgaacacgaccgaactgcgcagctgg
gcggccgaggcatcgggcctgccggtctggctcgccgaggaggtccatccaatcgtgggc
gatctggccgagacgatctcgctcctcctgcccgagcctagccagaccagcgaccgcacg
ctcgacgggtggatgcgcgagctggtttccctcacaggccgcccggccgaggtgcgccgg
gccgccatcctcgacgcctgggacaggctcagcacgcccgagcggttcctcttcaacaag
ctcatcaccggcggtttccgcatgggcgtgagccaggggctgatgacgcgcgcgctggcg
caggcgaccggtgtcgacgaggcggtgctggcgcaccggctgatgggcgactggaagccc
agccggatcggcttcgagacgctgatcggcgcacacgatcccgaggccgatgcctcgaag
ccctatccgttcgcgctcgcctcgccggtcgaggaggtggcggcgctgggagatcccgcc
gactggcttgcggaatggaaatgggatggcatccgcggccagctcgtgaaccgcgcgggc
gccttcgcactctggtcgcgcggcgaggaactggtgacggaccgtttcccggatctcgct
ccgctccgggatttcctgccccccggtctcgtgatcgatgccgaggtgctggcctggggc
ggcgagggtcccctgcccttcgccgcgctccagaagcggatcggccgcctgaccgtgcca
aagaagatcctcgccgaggcgcccgcgcatctgctggcctacgatcttctggaggaaaac
ggcgaggatctgcgcgcggccccgctcgcgcaccgtcgcgcccggctcgaggcggtgctg
tcagccctgcccccgggcgtgccgatctcgccctcgccgctggtggccttcgacgactgg
gagacgctgggcgagatccgcgccacggcgcgcgagaagatcgccgaggggctgatgctg
aagcgcgcctcctcgccctatttcgtcggccgcaagcgcggcgactggtggaaatggaag
ctcgatccctatacggtcgatgcggtcatgctctatgcccagcagggcgcgggccgccgc
gccaccctcttcaccgacttcaccttcggcgtgcgcgacggcgacgatctcgtgcccttc
accaaggcctattccggcctcaccgatgccgagttccgccagatcaccgactgggtgcgg
aagaacacgctggagcggttcggacccgtccggcgcgtcccgcccgagctggtcttcgag
ctggccttcgagggcattcaggccagcccccgccacaagtccggcatcgcgctccgcttc
ccgcgcatggtgcgctggcggaaggacaaacccgcagccgagatcgacacgctcgaaagc
ctgcgcgaactgctcgcagcgacgggcggggcggccccatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RSP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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