KEGG T00284: RSP

Rhodobacter sphaeroides 2.4.1: RSP_2679

Entry

RSP_2679 CDS T00284

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rsp Rhodobacter sphaeroides 2.4.1

Pathway

rsp03410	Base excision repair
rsp03420	Nucleotide excision repair
rsp03430	Mismatch repair
rsp03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rsp03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rsp03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rsp03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rsp03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1:complement(1323185..1325791)

AA seq 868 aa
MPANPRQDLDRYRAKRDFARTPEPQGRSEAPRPEAESLSFVVQKHAASRLHWDFRLEWNG
VLLSWAVTRGPSPDPSARRLAVRTEDHPLDYAEFEGTIPKGEYGGGTVMLWDRGTWEPQG
DFAEGLRTGQLKIRLAGERMRGRWTLVRMKPRPREKAENWLLIKEHDTHESEQTEELVER
HMTSVATGRTMEQIAAGKAPPRRTRQAALPAFRPLQLARLVSAAPEGEDWIHETKFDGYR
CLAALAGGRARLYTRSGLDWTAKFGALVEDVEALEAQEALIDGEVIAPGREGGSFSELQA
RLKSGGQLLFMTFDLLLLDGEDLTGQPLLARKERLKTLIGKGRGAVRFSGHIRGHGPEVH
ERICAAGLEGIVSKRASAPYAGSRNGDWLKVKCAHRQEFVICGWNASDKPGRPFASLVMG
SYEKSRLVYRGSVGSGFGAPLFRELKPLLAERAQSACPFDRTPAEAKGAHWLKPELVAEV
SFTELTAEGHIRHGVFAGLRSDKDAREVRLEEPAPETPAPRKSGVRKKGTKTARPDAPSP
DEPAPEPARKPRTARGEKKETTMARPDDLRVAGIRISHPDRRIYDRPAVTKREVAEHAEA
LAPRMLRFLKDRPVSLLRCPEGAAAECFFQKHRTRGMPVAMKTVPVETKSGPEDFITLPD
VAALVGATQMGTLEFHIWGSRNRSLQRPDRLVFDLDPDEGLDFAHVRTAAAELRGLLTDL
GLPSVPMLSGGKGVHVIVPLKPKAEWESVKLFSRALATHLAQEAPDRYTATMAKAGRKGR
IFIDWLRNDRGSTAIAPYSLRARPGAPVATPVDWDELASARSGGDWTIRSIRDRLDRPCP
LAEASARPATLGRTVIGRLERLVAGGKP

NT seq 2607 nt +upstreamnt +downstreamnt
atgcccgccaacccgcgacaggatctcgaccgctaccgcgccaagcgcgacttcgcgcgc
acgcccgagccgcagggccgttccgaggcgccgcgccccgaggcggagagcctgtccttc
gtcgtgcagaaacatgcagcctcccgtctgcactgggatttccggctggagtggaacggt
gtcctgctgagctgggccgtgacgcgcggcccctcgcccgatccgtccgcccgcaggctt
gcggtgcgaaccgaggatcatccgctggattatgccgagttcgagggcacgatccccaag
ggcgaatatggcggcggcacggtcatgctctgggaccggggcacttgggaaccgcagggc
gactttgcggaggggctgcgcaccggtcagctcaagatccgcctcgcgggcgagcggatg
cgcggccgctggacgctggtgcgcatgaaacccaggccgcgcgagaaggccgagaactgg
ctcctcatcaaggagcacgacacgcatgaaagcgagcagaccgaggagctggtcgagcgg
cacatgacctcggtcgcaacggggcggaccatggagcagatcgccgccggcaaggcgcca
ccgcggcgcacgcgccaggctgccctgcccgccttccggccgctccagctcgcgcgcctc
gtttcggcggcgcccgagggcgaggactggatccacgagaccaagttcgacggctaccgc
tgcctcgcggccctcgccggaggtcgggcccgcctctacacccgctccggcctcgactgg
acggccaagttcggcgccctcgtcgaggatgtcgaggcgcttgaggcccaggaggcgctg
atcgacggcgaggtgatcgcgccgggccgggagggcggctcgttctccgagctgcaggca
cggctgaaatcggggggccagctcctcttcatgaccttcgacctgctgctcctcgacggc
gaggacctgaccggacagccgcttctcgcgcggaaggagcggctcaagacgctgatcggc
aaggggcgcggcgcggtgcgcttctcgggccacatccgcggccacggccccgaggtgcac
gagcgcatatgcgcagcgggccttgaagggatcgtctcgaagcgggcctccgcgccctat
gcgggcagccggaacggcgactggctgaaggtgaaatgcgcgcaccggcaggaattcgtg
atctgcggctggaacgcctcggacaagccgggccgtcccttcgcctcgctggtgatgggc
agctacgaaaagagccgtctggtctaccgcggcagtgtcggcagcggcttcggcgccccc
ctgttccgcgagttgaagccgcttctggccgaacgggcgcaaagcgcctgccccttcgac
cgcacgccggccgaggccaagggggcgcactggctgaagcccgagctggtggccgaggtg
agcttcaccgaactgacggcggaggggcacatccggcacggggtcttcgccggcctgcgg
agcgacaaggacgcgcgggaggtgcggctcgaggagcccgcgcccgaaacgcccgcgccc
cggaagtcgggcgtgcggaagaaggggacgaagacggcccggccagacgccccctcaccc
gacgagcccgcccccgagcctgcccggaaaccccggacggcgcgcggggagaagaaggag
acgacgatggcccgacccgacgacctgcgcgtcgcaggcatccgcatcagccaccccgac
cggcggatctacgaccggcccgccgtcacgaagcgcgaggtggcggagcatgccgaggca
ctggcgccgcggatgctgcgcttcctgaaggatcgtcccgtctcgctcctgcgttgcccg
gaaggggcggcggcggagtgcttcttccagaagcaccgcacccgcggcatgcccgtcgcg
atgaagacggtgcccgtcgagacgaaatcggggcccgaggatttcatcaccctgcccgat
gtcgcggctctggtcggggccacgcagatggggacactcgaattccacatctggggctcg
cgcaaccgcagccttcagcgaccggaccggctggtgttcgatctcgaccccgacgagggt
ctcgacttcgcccatgtgcggaccgcggcggccgagctgcgcggtctgctcacggacctc
ggcctgccctcggtgccgatgctctccggcggcaagggggtgcatgtgatcgtgccgctg
aagcccaaggccgaatgggagagcgtgaagctcttctcgcgggcgctcgccacccatctg
gctcaggaggcgcccgaccgctacacggccacgatggccaaggccgggcgcaagggccgg
atcttcatcgactggctgcggaacgaccgcggctcgacggcgatcgctccctacagcctg
cgcgcccgcccgggcgcgccggtggcgacgccggtcgactgggacgaactcgcctcggcc
cggtcgggcggcgactggacgatccgctccatccgcgaccggctcgaccggccctgcccg
ctggccgaggcctccgcccggcccgcgacactgggtcggaccgtgatcgggcggctcgag
cgacttgtggcaggagggaaaccatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RSP (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (18)   

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