KEGG T00512: Rsph17025

Rhodobacter sphaeroides ATCC 17025: Rsph17025_1218

Entry

Rsph17025_1218 CDS T00512

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rsq Rhodobacter sphaeroides ATCC 17025

Pathway

rsq03410	Base excision repair
rsq03420	Nucleotide excision repair
rsq03430	Mismatch repair
rsq03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rsq03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rsq03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rsq03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rsq03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1260095..1262635)

AA seq 846 aa
MSEAARPQDLERYRARRDFARTPEPDGRTPEDRAGALRFVVQKHAARRLHWDFRLEWNGV
LLSWAVTRGPSADPSARRLAVRTEDHPIDYAGFEGTIPKGEYGGGTVMLWDRGTWEALDD
VNKGLSEGRLKFRLEGERMRGGWMLVRLKPRAGDKGENWLLIKEHDAHERPGPEGLVEAH
VTSVESGRRMEEIAEGRRPRQRRKPAAPPRFRPLQLARLVPAAPDGPDWLHETKFDGYRC
LAALADGKVRLHTRSGLDWTDKFGTLVPDLARLAVGRALIDGEVIAPGEASGAFSELQAR
LKTGGTLAFMAFDLLALDDEDLTGLPLLERKARLESLLEGETGAIHYSTHIRGHGPEVHE
RMCAAGQEGIISKRVEAPYSGTRNGDWLKVKCVLRQEFVICGWKASDKPGRPFASLVMGS
YETGRLTCRGAVGSGFDARTFRELKPLLAGRARATSPFGHVPEGAEGARWLRPDLVAEVT
FTELTRDGHIRHGVFAGLRDDKPARDVRLEAPEDALAEDAAPPKPPARAPREGRTNEDPM
PQADNDVRVAGIRISNPDRRIYERPAVTKREVAEHYEALGPRMLPFLRDRPVSLVRCPDG
AAGECFFQKHRTRGMPSAIRTVKVETKSGPEDYITLPDVPALVGAAQMGALEFHIWGSRN
RRLERPDRMVFDLDPDEGLDFARVREAAAELRVRLDDLGLPAVPMLSGGKGVHVIVQLKP
AAEWESVKLFTRALSTLLAEEAPDRYTAAMAKAGRKGRIFIDWLRNDRGSTAVAPYSLRA
RPGATVATPITWDELARARSAGDWTIRSIRERLEGPCPLAEARPVTLGRTVIGRLERLVT
QFKEGT

NT seq 2541 nt +upstreamnt +downstreamnt
atgtccgaagccgcgcgcccccaggatctcgaacgctaccgggccaggcgcgacttcgcc
cgcacgcccgagccggacggacgcacgcccgaggatcgcgcgggcgcgctccgcttcgtg
gtgcagaaacacgccgcccgccgccttcattgggacttccggctggaatggaacggggtg
ctgctcagctgggccgtcacgcgcgggccatcggccgacccgtccgcccgccgcctggcc
gtccgcaccgaggatcacccgatcgactacgccggcttcgagggcaccatccccaagggc
gaatatggcgggggcaccgtgatgctctgggatcgcgggacgtgggaggcgctcgacgac
gtcaacaaggggttgagcgagggccggctcaagttccgcctcgagggcgagcggatgcgc
ggcggctggatgctcgtgcgcctcaagccacgcgcgggcgacaagggcgagaactggctg
ctgatcaaggagcatgacgcgcacgaacggccggggcccgaggggctggtcgaggcccat
gtgacctctgtcgagagcggccgtcgcatggaggagatcgccgaggggcgcaggccgcgc
cagcgccgcaagccggccgccccgccccggttccggcccctccagcttgcgcgcctcgtg
ccggccgcgccggacgggccggactggctgcacgagacgaagttcgacggctatcgctgc
ctcgccgcgctcgcggacggcaaggtgcgcctccacacccgttcggggctggactggacg
gacaagttcggcacgctggtgcccgacctcgcgcgcctcgcggtcgggcgggcgctgatc
gacggcgaggtgatcgcccccggagaagcgagcggcgccttctccgaactgcaggcgcgc
ctcaagaccggggggacgctcgccttcatggccttcgacctgctggccctcgatgacgag
gatctgaccggcctgcccctgctggagcgcaaggcacggctcgagagccttctggaggga
gagacgggcgcgatccactactcgacccacatccggggccacggccccgaggtgcacgag
cggatgtgcgcggccgggcaggaggggatcatctcgaagcgggtcgaagctccctattcc
ggcacgcggaacggcgactggctcaaggtgaaatgcgtcctccgtcaggagttcgtgatc
tgcggctggaaggcgtcggacaagcccggccgccccttcgcctcgctcgtgatgggcagc
tacgagacgggccgcctgacctgcaggggcgcggtcggcagcggctttgacgcgcggacc
ttccgcgagctgaagcccctgctggccgggcgcgcgcgcgccacctctccgttcggccat
gtccctgagggggccgagggcgcgcgctggctgcgccctgatctggtggccgaggtgacc
ttcaccgaattgacgcgcgacgggcacatccgccacggcgtctttgcgggcctgcgcgac
gacaagcccgcccgcgacgtgcggctcgaggcgccggaggacgccttggccgaggatgca
gcccccccgaagccgccggcgcgcgcgccgcgcgaaggcaggacgaacgaggatcccatg
ccccaagccgacaatgacgtgcgggtggccggcatccgcatcagcaatcccgaccgcagg
atctatgagcggcccgccgtgaccaagcgcgaggtggccgagcattacgaggcgctcggc
ccgcggatgctgccgttcctgcgcgacaggccggtgtcgctggtgcgctgcccggacggc
gcggcgggcgagtgtttcttccagaagcaccggacccgcggcatgccctcggcgatccgc
accgtgaaggtcgagacgaagtccgggcccgaggattacatcaccctccccgatgtcccg
gccctcgtcggggcggcgcagatgggcgcgctcgagttccacatctggggatcgcgcaac
cgccgcctcgagcggccggaccggatggtcttcgacctcgatcccgacgagggcctcgac
ttcgcccgcgtgcgcgaggcggcagcagagctgcgcgtgcgtctcgacgatctgggcctg
cccgcggtgccgatgctgtcggggggcaagggcgtgcatgtgatcgtgcagctgaagccc
gcggccgaatgggagagcgtgaagctcttcacgcgcgcgctctcgaccctgctcgcggaa
gaggcgcccgatcgctacaccgccgcgatggcgaaggccggccgcaagggccggatcttc
atcgactggctgcgcaacgaccgcggctcgaccgccgtcgccccctacagcctgcgcgcg
cggcccggtgcaacggtggcgaccccgatcacatgggacgaactggcccgcgcccgctcg
gccggagactggacgatccgctcgatccgcgagcggctcgagggcccctgcccgctggcc
gaggcccgccccgtgacactcgggcggacggtgatcggccggcttgaacgactggtgacg
caattcaaggaggggacatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RSQ (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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