KEGG T00512: Rsph17025

Rhodobacter sphaeroides ATCC 17025: Rsph17025_1569

Entry

Rsph17025_1569 CDS T00512

Definition

ATP-dependent DNA ligase (EC:6.5.1.1)

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rsq Rhodobacter sphaeroides ATCC 17025

Pathway

rsq03410	Base excision repair
rsq03420	Nucleotide excision repair
rsq03430	Mismatch repair
rsq03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rsq03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rsq03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rsq03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rsq03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

1608593..1610191

AA seq 532 aa
MKRFATLFDLLDRTTRTSAKVAALADYFRDAPEEDRVWTIALLSGRRPKRSVNATELRSW
AAEAAGLPVWLAEEVHPIVGDLAETISLILPEPTRASDRTLDDWMRMLIALTGRPAEERR
AAILDAWDRLTTPERFLFNKLITGGFRMGVSQGLMTRALAQATGVDEAVLAHRLMGDWNP
ARIRFETLIGAHDPEADASKPYPFALASPVEDVAALGPPSDWLAEWKWDGIRGQLVNRAG
AFALWSRGEELVTDRFPDLAPLRDFLPPGLVIDAEVLAWGGEAPLPFAALQKRIGRLTVP
KKLLAEAPAHLLAYDLLEENGEDLRAAPLAHRRARLEAVLAALPPGLPIAPSPLVSFDDW
ETLGQIRATARARIAEGLMLKRASSPYFVGRKRGDWWKWKLDPYTVDAVMLYAQQGAGRR
ATLFTDFTFGVRDGDDLVPFTKAYSGLTDAEFRQITDWVRKNTLERFGPVRRVPPELVFE
LAFEGIQASPRHKSGIALRFPRMVRWRKDKPAAEIDTLESLRALLASTGAAP

NT seq 1599 nt +upstreamnt +downstreamnt
atgaagcgcttcgcaaccctgttcgacctgctcgaccgcaccacgcgcacctccgccaag
gtggcggctctggccgactatttccgcgacgcgcccgaggaggaccgggtctggacgatc
gcgcttctttcgggccgccggccgaagcgctccgtgaacgcgaccgaactgcgcagctgg
gccgccgaggccgcgggcctgcccgtctggctggccgaggaggtgcatccgatcgtgggt
gacctcgccgagacgatctcgctcatcctgcccgagcccacgcgtgccagcgaccggacg
ctcgacgactggatgcggatgctgatcgcgctcaccggccgccccgccgaggagcggcgt
gcggcgatcctcgacgcctgggaccggctgaccacgcccgaacggtttctcttcaacaag
ctcatcaccggcggcttccgcatgggcgtgagccaggggctgatgacgcgcgcccttgcg
caggccacgggcgttgacgaggcggtgctggcgcatcgtctgatgggcgactggaacccc
gcgcggatccggttcgagacgctgatcggcgcgcatgaccccgaggcggatgcctcgaaa
ccctacccgttcgccctggcttcgccggtcgaggatgtggcggcgctggggccgccctcg
gactggcttgcggaatggaaatgggacggcatccgcggccagctcgtgaatcgcgcgggc
gccttcgcgctctggtcgcgcggcgaggagctggtcacggaccgttttcccgacctcgcc
cccctgcgcgacttcctgccccccggcctcgtgatcgacgccgaggtgctggcctggggc
ggcgaggctcccctgccctttgccgcgctccagaagcggatcggtcgactgacggtcccg
aagaagctcctcgccgaggcgcccgcgcatcttctggcctacgacctgctggaagagaac
ggcgaggatctgcgcgccgccccgctcgcgcaccgacgcgcgcggctcgaggcggttctg
gccgccctcccgccgggcctgcccatcgccccctcgccgctggtgtccttcgacgactgg
gagacgctgggccagatccgcgccaccgcccgcgccaggatcgccgaggggctgatgctg
aagcgggcctcctcgccctatttcgtcggccgcaagcgcggcgactggtggaaatggaag
ctcgacccctacacggtcgatgcggtgatgctctatgcccagcaaggggccgggcggcgg
gcgactctctttaccgacttcaccttcggggtgcgcgatggcgacgatctggtgcccttc
accaaggcctattcgggcctgaccgacgccgagttccggcagatcaccgactgggtgcgc
aagaacacgctggaacggttcggccccgtgcgccgcgtgccgcccgagcttgtgttcgaa
ctggccttcgagggcatccaggccagtccgcgccacaagtcgggcatcgccttgcgcttt
ccgcgcatggtgcgctggcggaaggacaagcccgcggccgagatcgacacgctggagagc
ctgcgcgcgcttctcgccagcaccggcgccgccccatga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RSQ (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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