KEGG   Rhodovulum sulfidophilum: NHU_03618
Entry
NHU_03618         CDS       T04143                                 
Symbol
rnr
Name
(GenBank) ribonuclease R
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
rsu  Rhodovulum sulfidophilum
Pathway
rsu03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:rsu00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    NHU_03618 (rnr)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsu03019]
    NHU_03618 (rnr)
   03016 Transfer RNA biogenesis [BR:rsu03016]
    NHU_03618 (rnr)
Enzymes [BR:rsu01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     NHU_03618 (rnr)
Messenger RNA biogenesis [BR:rsu03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     NHU_03618 (rnr)
Transfer RNA biogenesis [BR:rsu03016]
 Prokaryotic type
  tRNA degradation factors
   NHU_03618 (rnr)
SSDB
Motif
Pfam: RNB CSD2 S1 MarR_2 RNase_II_C_S1
Other DBs
NCBI-ProteinID: BAQ70750
UniProt: A0A0D6B7H4
Position
complement(3746706..3748961)
AA seq 751 aa
MTRIPAKTEILDWIAAHPGQTSKRDIAKAFGLKGADRIDLKRLLKELEDEGHLEKRKRSY
RDPERLPPVTVLQVLAPNADGDLFARPLEWHGEGAAPRVLYLPRQSDAALGEGDRILAKL
QEVRAEDHQYEARLIRKIGSNPKRILGIFRKATEGGRLLPIDKGADREWMVAASLTHGAR
DGELVEAELAGPRGRMGLPKARIVERLGDPTAPRAVSLIAIHQHGIPDDFPDEVIAEADR
AKPAGLGTREDLRALPLVTIDPADARDHDDAVLAIPDDDPANPGGHILWVAIADVAHYVT
PGSRLDREARRRGNSSYFPDRVVPMLPDRLSGDLCSLHEGVPRACMAVRMKIDASGHKLS
HRFTRGLMQSAGAFAYEEVQAAEEGKPSDRTAPLLDEVIHPLYAAYRALIRAREARQPLD
LDLPERRIELSDEGKVASVKFRDRLDAHRLIEEFMVLANVAAAEELSRLQRPLLFRVHEE
PSPEKLDALREVAGASGFTLAKGQVLHTRQLNDLLDQAMGTEFSELINLSTLRSMTQAYY
FPENFGHFGLALKSYAHFTSPIRRYADLIVHRALISAHGWGRDGLSPEDVDELEATAKHI
SETERRSMAAERDTTDRYLAAYLSDRVGNEFGGRISGIARFGVFVSLDETGADGLIPIRE
LGNEYFHHDRDAQTLMGSNSGLVIGIGQRVTVRLAEAVPVTGGLTFELLSIEDRALPRGA
VRGRGKPVRRKVVRAKAKSDKVKRKVKRTRR
NT seq 2256 nt   +upstreamnt  +downstreamnt
atgacccgcatccccgccaagaccgagatcctcgactggatcgccgcccatcccggccag
acctccaagcgcgacatcgccaaggcgttcgggctgaagggcgccgaccgcatcgacctc
aagcgcctgctcaaagaactcgaggacgagggccatctcgaaaagcgcaagcgcagctat
cgcgatcccgaaaggctgcccccggtcacggtgctgcaggtcctcgcgcccaatgccgat
ggcgatctttttgcccgcccgctcgaatggcatggcgagggcgcggcgcccagggtgctg
tacctgccccggcaaagcgacgcggcgctgggcgagggcgaccggatcctggccaagctg
caggaggtccgggccgaggatcaccaatacgaggcgcggctgatccgcaagatcggctcg
aacccgaaacgcatcctgggcattttccgcaaggccaccgaaggcggccggctcttgccc
atcgacaagggtgccgacagggaatggatggtggcggccagcctcacccatggcgccagg
gacggcgaactggtcgaggccgaactggctggaccgcgcggccggatgggcctgccgaag
gcccgcatcgtcgagcggctgggcgatccgaccgcgccgagggcggtcagcctgatcgcc
atccaccagcatggcattcccgacgatttccccgacgaggtgatcgccgaggccgaccgc
gccaagcccgccgggctgggcacgcgcgaggacctgcgtgcgctgccgctggtcaccatc
gaccccgcggatgcgcgcgaccacgacgatgctgtgctggcaatacccgatgacgacccg
gccaacccgggcggccatatcctctgggtcgcgatcgccgatgtggcccattacgtgacc
ccgggctcgcggctcgaccgcgaggcgcggcggcggggcaactcctcctatttccccgat
cgcgtcgtgccgatgctgcccgaccggctttcgggcgatctgtgttcgctgcacgagggc
gtgccgcgcgcctgcatggcggtccggatgaagatcgatgcctcgggccacaagctgtcg
caccgcttcacccgcgggctgatgcaatcggccggggccttcgcctatgaagaggtgcag
gcggccgaggagggcaagccctcggaccgcaccgcgccgctgctcgacgaggtgatccac
ccgctttacgccgcctatcgcgcgctgattcgcgcccgcgaggcgcgccagccgctcgat
ctcgacctgcccgagcgccggatcgagctgtccgacgagggcaaggtggcctcggtcaag
ttccgcgaccggctggatgcgcaccggctgatcgaggaattcatggtgctggccaatgtc
gccgccgccgaggagctgtcccggctgcaacgcccgctgctgttccgggtccatgaggag
ccgagcccagaaaagcttgacgcgctgcgcgaggtggcgggcgcctcgggcttcaccctg
gccaaggggcaggtgctgcatacgcgccagctgaacgacctgctcgatcaggcgatgggg
accgagttttcagaactcatcaacctctcgaccctgcgctcgatgacccaggcctattac
ttccccgagaatttcggccatttcggtctggcgctgaaatcctatgcccatttcacctcg
ccgatccggcgctatgccgacctgatcgtgcaccgggcgctgatttcggcccatggctgg
ggcagggacgggctcagccccgaggatgtcgacgagctcgaggccaccgccaagcatatc
agcgagacagagcgccgctcgatggcggccgagcgcgacaccaccgaccgctaccttgcc
gcctatctgtcggaccgggtgggcaatgaattcggcggtcggatctcgggcatcgcgcgg
ttcggcgtcttcgtctcgcttgacgagaccggggccgacgggctcattccgatccgcgag
ctgggcaacgagtatttccaccacgaccgcgatgcccagaccctgatggggtcgaatagc
ggtctggtgatcggcatcggccagcgggtgacggtgcggctggccgaggcggtgccggtg
accggcgggctgaccttcgagcttctgtcgatcgaggatcgggcgctgccgcgcggggcc
gtgcgcggccggggcaagccggtgcggcgcaaggtggtgcgggccaaggcgaaatcggac
aaggtcaagcgcaaggtcaagcggacccgccgctga

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