KEGG T01544: Rta

Ramlibacter tataouinensis: Rta_07780

Entry

Rta_07780 CDS T01544

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rta Ramlibacter tataouinensis

Pathway

rta03410	Base excision repair
rta03420	Nucleotide excision repair
rta03430	Mismatch repair
rta03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rta03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rta03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rta03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rta03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

337278407

NCBI-GeneID:

10831357

UniProt:

F5XXQ6

Position

complement(806427..808886)

AA seq 819 aa
MVQKHWATRLHYDFRLELEGTMKSWAVPKGPSFDPADKRMAMPTEDHPIAYNRFEGTIPP
GNYGAGKVIIWDKGTWVPLEDPHRGWREGKLKFELRGHKLRGHWTLVRMKGRGNGREDPW
LLIKERDELARPAAEFSVVDEMPDSVGHLPDVPEGAASSPAPSSSSAPAADAAVPASVAP
QAAVGGPPAGARPAALPQEMQPQLATLVEGPPEDPQNWIYEIKFDGYRMLARAEGGAVRL
VTRNGNDWTHRLPHLERALVAMELPDGWYDGEIIVPGNGTPADFQSLQGAFESSRTADIV
YHLFDLPYCAGHDLRDVPLEQRRAVLQRVVERRPQPGVRFSAVFDAPPEDIVASACRLGL
EGVIGKRRDSRYVTRRSADWIKLKCARRQEFVIGGFTDPKGSRTGIGSLLLGVHGAQGEL
KYAGNVGTGFNEQSLRQLRERLDALATDTKPFASGAQIPKKAHWVRPELIAEVSFGEWTR
DGRVRHSVFRGLRGDKAPQAITREEAMPAPAAEPAPAPATASVALPAKLRVSHPERVIDA
ASGTTKIQLVRYYALVAPLMMPHLKNRPVSLVRAPQGIGGELFFQKHAERYQMAGIEALD
PALDPDHPPVLEVVRPEGLLSAAQMNVIEFHTWNGVKTAIAKPDRMTFDLDPGEGVQWPQ
VQEAAQLVRAFLGELGLPAFLKTSGGKGLHVVVPLKKQRDWDTVKDFSQAIVQHLARTLP
DRFVAKSGPSNRVGKIFIDYLRNGYGATTVAAWSARSRPGLGISVPVRWEELGALGSGAH
WTVATVHTRLDEGNAPWSDYEAQRAGLSRAMKTLGFQRP

NT seq 2460 nt +upstreamnt +downstreamnt
gtggtccagaagcactgggccacgcggctgcactacgacttccggctggagctggaaggc
accatgaagagctgggccgtgcccaagggccccagcttcgacccggccgacaagcgcatg
gcgatgccgaccgaggaccaccctatcgcctacaaccgcttcgagggcaccatcccgccg
ggcaactatggcgcgggcaaggtcatcatctgggacaagggcacctgggtgccgctggaa
gacccgcaccggggctggcgcgaaggcaagctgaagttcgagctgcgcgggcacaagctg
cgcggccactggacgctggtgcgcatgaagggccgcggcaatggccgcgaggacccctgg
ctgctgatcaaggaacgcgacgagctggcccggccggcggccgagttcagcgtggtcgac
gagatgccggacagcgtgggccacctgcccgacgtgccggagggcgcggcatcctccccg
gcaccgtcctccagctcggcccctgctgcggatgccgcggtgcccgcgtccgtggcgccg
caggcagccgtcggcggaccgcccgccggcgcgcgtcccgcggcgctgccgcaggagatg
cagccgcagctggcgaccctggtcgaggggccgccggaggatccgcagaactggatctac
gagatcaagttcgacggctaccgcatgctcgcgcgcgccgagggcggcgcggtgcgcctc
gtcacccgcaacggcaacgactggacgcaccggctgccgcacctggagcgggccctggtc
gcgatggagctgcccgacggctggtacgacggcgagatcatcgtgccgggcaacggcacc
cccgccgacttccagtcgctgcagggcgccttcgagagctcgcgcacggccgacatcgtc
taccacctgttcgaccttccctattgcgccgggcacgacctgcgcgacgtgccgctggag
cagcgtcgcgcggtgctgcagcgggtggtggaacgccgcccgcagccgggcgtgcgcttt
tccgccgtgttcgacgcgccgcccgaggacatcgtggcctcggcctgccgcctggggctg
gagggcgtgatcggcaagcggcgcgattcccgctacgtcacgcggcgctcggccgactgg
atcaagctcaagtgcgcgcggcgccaggaattcgtcattggcggcttcaccgaccccaag
ggctcgcgcaccggcataggctcgctgctgctgggcgtgcacggtgcccagggcgagctg
aagtacgccggcaacgtgggcaccggcttcaacgagcagagcctgcggcagctgcgcgag
cggctggacgcgctggccaccgacaccaagccgttcgcgtccggcgcgcagatcccgaag
aaggcgcactgggtgcggccggagctgatcgccgaggtgtccttcggcgaatggacgcgc
gacgggcgggtgcggcattcggtgttccgcggcctgcgcggcgacaaggcgccgcaggcg
atcacgcgcgaggaggcgatgccggcacccgcagcggaaccggcacccgcaccggcaacg
gcatccgtcgccctgcccgccaagctgcgcgtcagccacccggagcgggtgatcgacgcc
gccagcggcaccaccaagatccagctggtgcgctactacgccctggtggcgccgctgatg
atgccgcacctgaagaaccggccggtgtctctggtgcgcgcgccccagggcatcggcggc
gagctgttcttccagaagcacgcggagcgctaccagatggcgggcatcgaggcgctggac
ccggccctcgatcccgaccacccgcccgtgctggaagtggtgcggcccgagggcctgctg
tcggcggcgcagatgaacgtcatcgagttccacacctggaacggcgtgaagaccgccatc
gccaagcccgaccgcatgaccttcgacctggacccgggcgaaggcgtgcaatggccgcag
gtgcaggaggcggcgcagctggtgcgcgccttcctcggcgagctggggctgccggccttc
ctcaagaccagcggcggcaaggggctgcacgtggtggtgccgctgaagaagcagcgcgac
tgggacacggtgaaggatttctcgcaggccatcgtgcagcacctggcccgcaccctgccc
gaccgcttcgtcgccaagagcgggcccagcaaccgggtcggcaagatcttcatcgactac
ctgcgcaacggctacggcgccaccacggtggccgcctggtcggcccgctcccggcccggc
ctgggcatctcggtgccggtgcgctgggaggagctgggcgccttgggcagcggcgcgcac
tggaccgtggccacggtgcacacccggctggatgagggcaacgcgccctggtccgactac
gaggcgcagcgcgccggcctgtcgcgcgccatgaagacgctcggcttccagagaccctga

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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