KEGG T02432: RTCIAT899

Rhizobium tropici: RTCIAT899_CH05080

Entry

RTCIAT899_CH05080 CDS T02432

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rtr Rhizobium tropici

Pathway

rtr03410	Base excision repair
rtr03420	Nucleotide excision repair
rtr03430	Mismatch repair
rtr03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rtr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rtr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rtr03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rtr03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

440225879

NCBI-GeneID:

14428602

UniProt:

L0LJZ9

Position

1040407..1042047

AA seq 546 aa
MMKAFADLLDRLVLTPSRNGKLKLLTDYFRDTPDPDRGYGLAAIAGTLEVRNVKPAMLRE
LVLERMDEVLFRYSYDYVGDLAETISLVWDKESDIERPAGAQPKLGEVIRRMNALGRTEV
RSFVRDLLDRLDTSGRFAFLKLATGAMRIGVSARLAKQALAEMSGKDVTEIETLWHGLQP
PYESLFHWLEGKGEKPILATPAIFHSVMLANPVEPGDLHGLDPRDFAAEWKWDGIRVQLS
RAGATSKLYSRSGDDISGAFPDVVDAMNFEGVMDGELLVGGTVRSNSPTRSFSDLQQRLN
RKTVTSKMLDEFPAFIRAYDLLFDGAEDVRARGFLDRRERLTEIIEAAPHDRFDLSPLVD
FISWEELDRLRSSPPDPVIEGVMIKRRDSAYLAGRAKGPWFKWKRDPYNVDAVLMYAQRG
HGKRSSYYSDFTFGVWAMTPEGEQLVPVGKAYFGFTDAELEVLDKFVRNNTVDRFGPVRA
VRADRDFGFVLEVAFEGINRSTRHKSGVAMRFPRIARLRPDKPPYEADRLETLIAMIDAK
APVVDE

NT seq 1641 nt +upstreamnt +downstreamnt
ttgatgaaagcctttgccgaccttctcgaccgcctagtgctgacgccgagccgcaatggc
aagctgaagctgctgaccgattatttccgcgatacgccagacccggaccgcggctatggt
ctggccgccattgccggcacgctcgaggtgcgcaacgtcaagcccgctatgctgcgcgag
cttgttctcgaacgtatggacgaggtgctgttccgctactcctacgattatgtcggcgat
ctcgccgaaacgatctcgctggtctgggacaaggagagcgacatcgagcgccctgccggc
gcgcagccgaaactcggcgaggttatcaggcgcatgaatgcgcttgggcggacggaggtg
cgcagcttcgtccgcgatctgcttgatcggttggatacttcgggccgtttcgcattctta
aagcttgcgacgggtgcgatgcgcatcggcgtctcggctcggcttgccaagcaggcgctg
gctgagatgagcggcaaggatgtaacggaaatcgagacgttgtggcatggcctgcaaccg
ccctatgaaagcctgttccactggcttgagggcaagggcgagaagccgattctggcgacg
ccggcgatcttccattccgtcatgctcgccaacccggtcgaaccgggcgatctccacggg
ctcgacccccgcgatttcgccgccgaatggaaatgggatggcatccgcgtccagctttcg
cgcgcgggcgccacgagcaagctctattctcgctccggcgatgacatatccggagccttt
cccgacgttgtggacgccatgaacttcgagggtgttatggatggcgagctgctggtcggc
ggcaccgtgcgttccaacagcccgacgcgcagcttttccgatctgcagcagcgcctgaat
cgtaagactgtgacttcgaagatgctcgacgagtttccggccttcatccgcgcctatgat
ctcctctttgacggtgcggaggacgtgcgcgcccgtggcttcctcgatcggcgcgagcgg
ctgaccgagatcatcgaggcggcaccgcacgaccgtttcgatctatcgccgctcgtcgat
ttcatttcttgggaggagctcgaccggctgcgctcctcgccgcccgacccggtcatcgaa
ggtgtgatgatcaagcgcagggacagcgcctatctcgcaggccgcgccaaaggcccatgg
ttcaagtggaagcgcgatccctataatgtcgatgccgtgctgatgtatgcgcagcggggc
catggcaagcgctccagctactattccgatttcaccttcggcgtctgggcgatgacgccc
gagggcgagcagctggttccggtcggcaaggcctatttcggctttaccgatgccgagttg
gaagtgctcgacaagttcgtgcgcaataatacggtcgatcgtttcggcccggtgcgtgcc
gtgcgtgccgatcgcgatttcggtttcgtgctcgaggtcgccttcgaaggcatcaatcgt
tccacccgccataaatccggcgttgccatgcgctttccccgcattgcaaggctacggcca
gacaagccgccctacgaggccgacaggctggaaactttgatcgcgatgattgacgccaag
gctccggttgtcgatgaatag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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