KEGG T02432: RTCIAT899

Rhizobium tropici: RTCIAT899_PC09420

Entry

RTCIAT899_PC09420 CDS T02432

Definition

DNA ligase D

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rtr Rhizobium tropici

Pathway

rtr03410	Base excision repair
rtr03420	Nucleotide excision repair
rtr03430	Mismatch repair
rtr03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rtr03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rtr03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rtr03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rtr03450]

SSDB

Motif

Pfam:

LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S

Other DBs

NCBI-GI:

440224820

NCBI-GeneID:

14434286

UniProt:

L0M010

Position

pRtrCIAT899c:2025945..2028521

AA seq 858 aa
MALETYNRKRDFSRTTEPRGRAGKKKIAISGNSYVIQKHDARRLHYDFRLELDGVLKSWA
VTKGPSLIVGEKRLAVQTEDHPLEYGDFEGTIPKGEYGGGTVIVWDKGSWTPLGDPHKGL
AKGHLEFELHGKKLGGRWHLIRMAGKPREKRENWLLIKGEDEAARPEGAADILEERPESA
KTGRIIDEVENEKPGWSSKSGKIRRRTSRKKDDDAKEEADKAETQTDATPVDPSSLKGAL
KAPLPSFVEPALATLVSKPPSGSRWLHEIKFDGYRLEVRIEAGRIKLLTRSGLDWSQKFG
KEIVSAFRDLPVGTAIIDGELVVEPAAGASDFSALQADLSEGRSDRFVFYAFDLLYLDGY
DLKASPLIGRKELLRKIIPSETGILRFSSHFDENGDLLLSHACRLSLEGIVSKIANDPYR
PGRGKSWVKSKCSSRQEFVIGGWVPSTTSRKAIGSLVLGVYQDGKLEHVGRVGTGYTHTV
AEQLFKRLTRLQVKENPFATKLTAEEHRGVRFVQPELVAEVEFRAWTADGHLRHASFRGL
REDKNPLEIVRETPKSTRESSAEKPARSSVSLTHGDRLYWPDEGVTKAGLADYYAEVWRY
MGPFVVGRPLALVRCPNGIAGQHFFQKHAWKGMNRNIALAKDPQDEEPYVSIDDLNGLIG
LVQAAVLEIHPWGSMIGNWEKPDMIIMDLDPGPDVAWSKVIAAAEETAERLRQTGLVPFV
KTSGGKGLHIVCPLVARAEWPAVKAFTKGIADAMAADSPDRYVSTITKSKRRGKILIDYL
RNQRGSTAVAPYSTRARPGAAVSMPLLWEELSPAIGPDYFTVLNVPTRLAALHSDPWADF
RKAAEPLPQPAAKAKRKL

NT seq 2577 nt +upstreamnt +downstreamnt
atggcattggagacctacaaccgcaaacgcgacttcagcaggacaaccgagccgagagga
cgagccggcaagaaaaagatcgcaatatccggcaacagctacgtcatccagaagcatgac
gcgcgccggctccactatgattttcgcctcgaattggacggagttttgaagagctgggcc
gtgaccaaagggccgagcctgatagtcggagaaaaacggctcgcggtgcagaccgaagat
cacccactggagtatggtgatttcgaaggcacgatccccaagggcgaatatggcggcggg
accgtcatcgtctgggacaagggctcttggacgccgcttggcgacccccataagggcctt
gcaaagggacatctcgaattcgagctccacggaaagaaactcggcggccggtggcatctg
atccgcatggcgggaaagccacgcgagaagcgggaaaactggctgctgatcaaaggcgaa
gacgaggcggcccgcccggaaggcgctgccgatattctcgaggaacgaccggaatcggca
aaaacggggcgtattatagacgaagtcgagaacgaaaagccgggctggtcttcgaagagc
gggaagatccgtcgcaggaccagccgaaagaaggatgatgacgccaaggaggaagccgac
aaagccgaaacgcaaacggatgcaacgcccgttgatccctcatctttgaagggtgccctc
aaggctcctctgccgtccttcgtcgaacctgctttggcgacattggtatccaaaccacct
tcgggctcccggtggcttcacgaaatcaaattcgatggctatcggctcgaggtccgcatc
gaggcaggccgcatcaagctgctgacacgcagcggcctcgactggagccagaaattcggc
aaggagattgtcagcgccttccgggatctccccgtcggcaccgcaatcatcgacggcgag
ctggtcgttgagccggcggccggcgcttccgatttctctgccctgcaggcggatctcagc
gaaggccgtagcgaccgcttcgtcttctatgctttcgatctcctctatctggacggatac
gacctgaaggcctcgcctctgatcggccgcaaggaattgctgcggaagatcatcccatcc
gaaaccgggatccttcgcttcagcagtcatttcgatgaaaatggcgacctgctgttgtcg
catgcctgcaggttgagcctggaagggatcgtatcgaagattgccaacgatccatatcgc
cccggccgcggcaagtcatgggtgaaatcaaaatgttcgtctcggcaggaattcgtgatc
ggcggctgggtcccatcgacaacgtcacgaaaggcgatcggctcgctggtgctcggcgtc
tatcaagacggcaagctcgaacatgtcggccgcgtcggtacgggatacacgcacactgtc
gccgagcagctcttcaaaaggctaacccgcctgcaagtgaaggaaaatcctttcgcaacc
aagctcaccgcggaagagcatcgcggtgtccgcttcgtgcagcccgaactggttgcggaa
gtcgaatttcgcgcctggacggcggacggccatttgcgccacgcctccttccgcggattg
cgagaagacaagaacccgctcgaaatcgttcgcgaaacaccgaaatccacgagggagtcc
tcagctgagaagccggcgcgcagcagcgtatccttgacccacggcgatcgcctctattgg
cctgacgaaggtgttacgaaggcggggcttgcggattattatgccgaggtctggcgttat
atggggcctttcgtcgtcggccggccgctcgcgctggtacgctgtcccaacgggattgcc
ggtcagcattttttccagaagcatgcctggaagggcatgaaccggaacatcgccttggcg
aaagatccgcaagacgaagagccctatgtcagcatcgacgacctgaatggcctgatcggc
ctcgtgcaggcagcagtcctcgaaatccatccctggggatcgatgatcggcaactgggaa
aagcccgacatgatcatcatggacctcgatccgggcccagacgtcgcctggagcaaagtc
atcgccgccgcggaagaaacggcagaacggctgaggcaaacagggctcgttcctttcgtg
aaaacttcgggcggaaaagggctgcacattgtctgcccgctggttgccagggccgaatgg
ccagcggtcaaggcctttaccaagggtatcgccgacgccatggccgccgacagccccgat
cgttatgtttccaccatcaccaagtcgaaacgccgcggcaagatcctgatcgattatctg
agaaatcaacgcggctcgactgccgtcgcgccctactccacccgcgcccggccgggcgcc
gccgtctcgatgcctttattatgggaggagctgagcccggcaatagggccggactatttt
accgtgctcaatgtgccgacgcggcttgccgcgctccattcggatccctgggccgacttc
cggaaagccgccgaaccgttgccccagcccgccgcgaaggccaagcgtaagttataa

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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