KEGG   Rathayibacter toxicus 70137: TI83_05770
Entry
TI83_05770        CDS       T03670                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rtx  Rathayibacter toxicus 70137
Pathway
rtx03030  DNA replication
rtx03410  Base excision repair
rtx03420  Nucleotide excision repair
rtx03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rtx00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TI83_05770
   03410 Base excision repair
    TI83_05770
   03420 Nucleotide excision repair
    TI83_05770
   03430 Mismatch repair
    TI83_05770
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rtx03032]
    TI83_05770
   03400 DNA repair and recombination proteins [BR:rtx03400]
    TI83_05770
Enzymes [BR:rtx01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     TI83_05770
DNA replication proteins [BR:rtx03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     TI83_05770
DNA repair and recombination proteins [BR:rtx03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     TI83_05770
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     TI83_05770
   MMR (mismatch excision repair)
    DNA ligase
     TI83_05770
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      TI83_05770
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 DNA_ligase_ZBD BRCT HHH_5 HHH PTCB-BRCT RNA_lig_T4_1
Other DBs
NCBI-ProteinID: AJM77579
UniProt: A0A2S5Y756
Position
1272941..1275295
AA seq 784 aa
MDSAVSARVEELRARIRIASAEYYEGDVSSLSDAEYDALVHELADLETRYPELVSDDSPT
QIVGGGVGVGLAPVEHAERMLSLDNVFSAEDLREWCDKTVASSGRPIRWLTELKIDGLAL
SLRYEHGTLVTSATRGDGLTGEDVTVNALHVPGIPQYLAGEGHPALVEIRGEVFIPVAAF
AELNVLQERLREEAVEEARSSWASRPSAARKPFDEDKARVAALRRFPTFANPRNAASGGL
RQQLDKKAGLDLRAGQERVRSLALYVHGMGAWPDPPVASQSEVYRLLAGWGLPVSKHNRV
VDSVEEVLEFVERYVRERHTVEHEIDGVVVKVDELALHDELGATSRAPRWAIAYKYPPEE
VYTRLLDIVVSVGRTGRATPFAQMEKVKVAGSEVRQATLHNADVVKVKGVLIGDTVVLRK
AGDVIPEILGPVVALRDGSERAFVMPTQCPECGTTLAPAKESDVDLRCPNAESCPAQVRG
RVEHIGSRGALDIEALGAVSAAALTQPRMPVDPPLRTEAGLFELTVADLFPIEVVVRDAD
TGLVKLDDSGQPKVVTPFRRKRESAKDGSFNPDLPFAGDAVSVPSLNAHRLIENIDRAKT
KELWRLLVALSIRHVGPVAARALAAYFGSLDAIRAASREELAAVDGVGEIIADALLAWCE
VDWHLEIVERWSAAGVRFSTPGHPGPGAAENEGGVLAGLTVVVTGALEGYSREQAQEAIL
RAGGKAGSSVSKKTDYVAAGTGAGSKLGKAEQLGVRIITAEEFHLLVTEGPQAITSLAEE
TTRS
NT seq 2355 nt   +upstreamnt  +downstreamnt
atggactctgctgtgtcagcgcgcgtcgaggagctgcgcgcgcgcatccgtatcgcgagc
gccgaatattacgagggcgacgtctcctccctttctgatgccgagtacgacgctctggtg
cacgaactcgcagacctggagaccaggtatcccgaacttgtcagtgacgattcgccgact
cagatcgtcggtggcggcgttggcgtcggcctcgccccggtcgaacatgcggagcggatg
ctctcgctcgacaacgtgttttcggccgaggacttgcgggagtggtgtgacaaaacggtc
gcctcgtccggccgcccgatccggtggctgacggaactcaagattgacggcttggcgctc
tctttgcgttacgagcacggcacccttgtcacctcggcgacccggggcgacggtcttact
ggcgaagatgtgaccgtcaacgcgttgcatgtgccgggtatcccgcagtatctggcaggc
gagggccacccggcactggtcgagatacgcggcgaggtcttcatcccggtcgcggcattc
gccgagttaaatgtcctgcaggagcgtctccgcgaggaggcggttgaggaggcccgatca
agctgggcctcccgcccgagcgcagctcgcaagcctttcgacgaagacaaagcccgtgtt
gccgcactgcgtcgctttccgacgtttgccaatccgcgcaacgctgcgagcgggggtctg
cgtcaacagctcgacaagaaggcagggctcgatctgcgtgcggggcaggagcgtgtgcgt
tcgcttgcactttatgtgcacggcatgggcgcttggcccgatccgccggtggcaagccaa
tccgaggtgtatcgccttctggcaggttgggggttgccggtcagtaaacacaatcgggtc
gttgactcggttgaggaggtcctggagttcgtcgagcgctatgtgcgtgaacggcacacg
gtcgagcacgaaattgacggtgtggtggtgaaggtcgacgagctcgccctgcacgacgaa
ctcggcgccactagcagggctccgcgctgggcaattgcgtacaaatacccgcccgaagag
gtgtataccagactgctcgacatcgtggtgagtgtcgggcgcaccgggcgagcgactcct
ttcgcgcagatggaaaaggtcaaggtggccggctcggaggtgcgacaagcgaccctgcac
aacgctgatgtggtcaaggtcaagggcgtgctgatcggcgacacggtggtcctgcgtaag
gcgggcgatgttattcccgagatactcggtccggtcgttgcgctgcgtgacggcagcgag
cgagcgtttgtgatgccgacgcagtgccccgagtgtggaacgacactggctccggcgaaa
gagagcgatgtcgatctccgctgtcccaacgctgaatcctgcccggctcaggtgcgtgga
cgtgttgagcacatcggcagtaggggagcgctcgatatcgaggcgctgggcgcggtgagt
gccgcggcgctcactcaaccccgaatgcctgtcgacccgccactgcgcaccgaggccggg
cttttcgagttgacggtggccgacctgttccccattgaagtggttgtgcgtgacgccgac
accgggctggtcaagctcgatgactccggccagcccaaggtggtcactcctttccgacgc
aagcgagagtccgcgaaagatggcagttttaaccccgatctaccgttcgcgggcgatgcg
gtgtcggtgccgtctcttaacgcccaccgcctgatcgagaacattgatcgcgcgaaaacc
aaggagttgtggcggctgctcgttgcgctgagcattcgccacgttggaccagtcgcagcg
cgtgctctcgccgcatattttggttccctcgacgcaatccgtgccgcgagccgtgaagag
ctggcggctgtggacggagttggcgaaatcatcgccgacgcgctgctcgcgtggtgtgag
gtcgattggcacctcgagattgtcgagcgctggtcggctgccggagtacgattctcgacg
cctgggcatccggggcccggtgctgccgagaacgagggcggcgtgctcgccgggctcact
gtggtggtgacgggagctctcgagggctactcacgcgagcaagctcaggaggcaatcctg
cgggccggtggcaaagccggttccagtgtctcgaaaaagaccgactacgtggcggctggc
accggagcggggagcaagctcggcaaggctgagcagttgggtgtacgaattatcacggca
gaagagttccacctgcttgtcactgaggggccacaggcgattacctccttggcggaggag
accacccgctcctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (37)   

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