KEGG   Rufibacter radiotolerans: TH63_14105
Entry
TH63_14105        CDS       T03996                                 
Name
(GenBank) protein RtcB
  KO
K14415  tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:6.5.1.8]
Organism
ruf  Rufibacter radiotolerans
Brite
KEGG Orthology (KO) [BR:ruf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03016 Transfer RNA biogenesis [BR:ruf03016]
    TH63_14105
Enzymes [BR:ruf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.8  3'-phosphate/5'-hydroxy nucleic acid ligase
     TH63_14105
Transfer RNA biogenesis [BR:ruf03016]
 Eukaryotic type
  tRNA spricing factors
   tRNA splicing ligase complex
    TH63_14105
 Prokaryotic type
   tRNA splicing ligases
    TH63_14105
SSDB
Motif
Pfam: RtcB Reg_prop
Other DBs
NCBI-ProteinID: AKQ46500
UniProt: A0A0H4VL14
Position
complement(3449938..3451161)
AA seq 407 aa
MAIVLNNITVFGEEIIDQSAIDQIQRCVSEEDIGVLTADAHYGYAHPIGGAVAYKNHVSL
SGVGFDIGCGNKAVRTDLLAQDVDIARIMNQIVRSIGFGVGRPNPKPIDHPVLDHIGKAD
FRPQRELKKLAAEQLGTVGSGNHFIDLFEDEEGYLWIGVHFGSRGFGHRTATGFIAMSQG
LGFFDKAKEGPMDGPPILFDIQSALGQDYIAAMSLAGEYAYAGRDVVVEKVLQILGAKST
EMIHNHHNFAWFERHQGEDYWVVRKGCTPAFPGQKGFIGANMSDNSVIIEGVESELSVRG
LYSTVHGAGRLLSRRAAAGKTKWMRDKNGVKRKTVVSKGLVDFDAVQQRMKEKGIELRGA
GADEAPEAYKKLEDVLKYQGNTIRVLHTLKPLGVAMAGEDVYDPYKD
NT seq 1224 nt   +upstreamnt  +downstreamnt
atggctattgtcttgaacaacatcaccgtttttggggaagagattattgaccaaagcgcc
attgaccaaatccagcgctgcgtgagcgaagaagacattggcgtgctcaccgccgatgcc
cattacggctacgcgcaccccattggcggcgcggtggcttacaagaaccacgtgtcgctc
tctggggtggggtttgacattggctgcggcaacaaagccgtgcgcaccgacctgctggcg
caagacgtggacattgcccgcatcatgaaccagatcgtgcgcagcatcggttttggcgta
gggcggcccaaccccaaacccattgaccaccccgtgctggaccacatcggcaaagccgat
tttagaccccagcgcgaacttaaaaaactagccgcggaacagctgggcaccgtgggcagc
ggcaaccatttcatagacctgttcgaggacgaggaaggctacctctggattggcgtgcac
ttcgggtcccggggcttcgggcaccggaccgccaccgggtttattgccatgtcacagggc
ctcggtttttttgacaaagccaaggaaggccccatggatggaccgcctatcttgtttgat
attcaatctgccctgggccaggactacatagccgccatgtctctggccggcgaatacgcc
tacgcgggccgcgatgtggtggtagaaaaagtgctacagattctgggcgccaagtccacg
gaaatgatccacaaccaccacaacttcgcgtggtttgagcggcaccagggtgaagactac
tgggtagtgcgtaagggctgtactcccgctttccccgggcagaaaggctttattggggct
aatatgtctgacaattctgtaatcatagagggcgtggaaagtgagctgtccgttcgggga
ttatattctacagtacacggcgcgggccgcctgctcagccgccgggccgccgcaggcaag
accaaatggatgcgcgacaaaaacggcgtgaaacgtaaaacagtggtatctaagggtctg
gtagattttgacgccgtacaacagcgcatgaaagaaaaaggcattgaactgcgtggcgcc
ggtgccgatgaagcccccgaagcctataagaaactggaagacgtcctgaagtaccagggc
aacaccatacgcgtactgcacaccctcaaaccgctgggcgtagccatggccggggaagat
gtgtatgacccgtacaaagattga

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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