KEGG   Hungateiclostridiaceae bacterium KB18: A4V00_09920
Entry
A4V00_09920       CDS       T04437                                 
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
ruk  Hungateiclostridiaceae bacterium KB18
Brite
KEGG Orthology (KO) [BR:ruk00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:ruk03009]
    A4V00_09920
Enzymes [BR:ruk01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     A4V00_09920
Ribosome biogenesis [BR:ruk03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    A4V00_09920
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 Cons_hypoth95 MTS TRAM Methyltransf_15 Met_10 Methyltransf_4 Ubie_methyltran PrmA Methyltransf_11 N6_N4_Mtase Methyltransf_12 PCMT Methyltransf_32 UPF0020 Methyltr_RsmB-F FtsJ AAA_17 CMAS
Other DBs
NCBI-ProteinID: ANU54312
UniProt: A0A1C7GRY8
Position
complement(1997506..1998873)
AA seq 455 aa
MALSKNEYIEMDFTGMTAEGAAVGRYEGEAVFVPMGAPGDRALVKIVKAAKTHAFGRLEK
LLKPSPCRVEPDCPVYRLCGGCCFRHITYQAELEIKEQKVRDALERIGGIKEPPLGPIIG
AKDRDGYRNKALLPIGQAPDGGIELGFYAKNSHRIVPCESCKLQPEEFSRAMEAFRQWAK
EYGDPVYDEVSHSGRMRRLFLRKAGATGEVMACVVVNGNGLHHEPELVDAMRGAVPGLKS
LVINSNRERTNVALGGRCRTVWGRDSIRDRLCGLEFEISPLSFYQVNRDQTEKLYRLAAE
YAAPEPGDLLLDLYCGTGTIGLSMAKSAGKLIGVEVQPQAVENARENARRNGIDNAEFLC
ADAAEAARELVRRGTRPQVVLLDPPRKGCGPKLVETVAEMGPQRVVYVSCDPATLARDLR
QFAGLGYGRIKGRPVDMFPGTGHVETIVLIQKKTS
NT seq 1368 nt   +upstreamnt  +downstreamnt
gtggccctgagcaaaaatgaatatattgagatggacttcaccggcatgaccgccgagggg
gctgccgtgggccggtatgagggcgaggcggtgtttgtacccatgggcgccccaggggac
agggccctggtgaagatagtgaaggccgcaaaaacccacgccttcggccggctggagaag
cttctgaagccctccccctgccgagttgagccggactgcccggtgtacaggctctgcgga
ggatgctgcttcaggcatatcacctatcaggcggagcttgagataaaggagcagaaggtc
cgtgacgcgcttgagcgcataggcggcattaaagagccgccgctgggcccaattataggc
gcaaaagacagggacggctatcggaacaaggccctgctgcccataggacaggccccggac
ggcggcatagagctgggcttctacgccaaaaactcccataggatagtgccctgcgagagc
tgtaagctacagcccgaggagttctcccgggctatggaggccttcaggcagtgggcaaag
gaatatggcgacccggtatatgacgaggtttcccactcggggcgtatgcggaggctgttc
ctgagaaaagccggggccaccggagaggtgatggcctgcgtggtggtaaacggcaacggc
ctacaccatgagccggagctggttgacgctatgcgcggggccgtgccggggctgaaatct
ttggtgataaactccaacagggagaggacaaatgtggccctgggcgggcgctgccggacg
gtatggggacgggacagcataagggaccggctctgcgggctggagtttgagatatcgccc
ctgtccttctaccaggtgaaccgggaccagacggagaagctctatagactggcggcggaa
tatgcggccccggaaccgggggacctgttgctggacctgtactgtggcacgggcaccatc
gggctgtccatggcaaagagcgcgggaaagctgatcggagtggaggtgcagccccaagcg
gtggaaaacgccagggagaacgcccggcgcaacggcatagacaacgcagagtttctgtgc
gccgacgcggccgaggccgcaagagagctggtccggcggggaacgcggccccaggtggtc
ctcctggatccaccgcgcaaaggctgcgggccaaagcttgtggagacggtggcggaaatg
ggcccccagagagtggtctacgtctcctgtgacccggccacgctggcaagggacctacgg
cagttcgccgggctggggtatgggaggattaaggggcggccggtggatatgttcccgggg
acggggcatgtggagactatcgtgttgatacaaaagaaaacctcgtag

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (21)   
   Pfam (21)   
All databases (30)   

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