KEGG   Ruminococcus bicirculans (ex Wegman et al. 2014): RBI_II00184
Entry
RBI_II00184       CDS       T03158                                 
Symbol
holA
Name
(GenBank) DNA polymerase III, delta subunit
  KO
K02340  DNA polymerase III subunit delta [EC:2.7.7.7]
Organism
rus  Ruminococcus bicirculans (ex Wegman et al. 2014)
Pathway
rus03030  DNA replication
rus03430  Mismatch repair
rus03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:rus00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    RBI_II00184 (holA)
   03430 Mismatch repair
    RBI_II00184 (holA)
   03440 Homologous recombination
    RBI_II00184 (holA)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rus03032]
    RBI_II00184 (holA)
   03400 DNA repair and recombination proteins [BR:rus03400]
    RBI_II00184 (holA)
Enzymes [BR:rus01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     RBI_II00184 (holA)
DNA replication proteins [BR:rus03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     RBI_II00184 (holA)
DNA repair and recombination proteins [BR:rus03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     RBI_II00184 (holA)
SSDB
Motif
Pfam: DNA_pol3_delta DNA_pol3_delta_C CENP-S
Other DBs
NCBI-ProteinID: CCO05958
UniProt: W0U8U5
Position
II:203091..204149
AA seq 352 aa
MALLTASALGKTIRENDIDSLYYFYGHDTAALESFTKRLVNKLCPADAQVMNFHKLDGKN
LDFPMLTDACEALPFMAERVVVTINDLNIDAVTKDDLDDLKKILGSLGETTTVIIYATGV
DLFKNKKYLTDKNKRFADFCEKHGTVCNFEYKRASDLGKSISTYLAKSGCTITKSNAEYL
ANLCLCDTAFISKELEKLSAYAEGREVTREDIDLLCIRRIESDGYSLAINILRGNAAMVF
TRLRELDVQNYEPYAIIGIIGFSLADIYRAKLARSSGRSVADVAKDFSYAKNREFAVKNA
YSECGNISAERIRKTLEILSETDLMLKTRSRGKDGDMLTLEQGLARSMALRC
NT seq 1059 nt   +upstreamnt  +downstreamnt
atggctttgcttacggcttcggctcttggtaaaacgataagagagaatgatatcgacagc
ctttattatttttacggacatgatacagcggcacttgaaagctttacaaaaaggcttgtg
aacaagctttgccctgctgacgctcaggtcatgaactttcataagcttgacggcaaaaat
cttgattttccaatgcttacagacgcttgcgaagctctgccttttatggctgaacgtgtg
gtggtgactataaacgaccttaatatagacgcagtgactaaggacgatctggacgacctg
aaaaagatcctgggctctcttggcgaaactaccacagtgataatctatgccacaggagtt
gaccttttcaagaacaaaaagtatcttacagacaaaaacaagcgctttgcagatttctgc
gaaaagcatggcactgtctgcaactttgaatacaaaagggcttccgaccttggaaagtct
atatccacctatcttgcaaaaagcggctgtaccataacaaaaagcaacgcagagtatctt
gcaaacctctgtttgtgcgacactgcatttatcagcaaggagcttgaaaagctttcggct
tatgcagagggcagggaggtaacaagagaggatatcgacttgctttgtatcaggcgtatc
gagtcggacggatattctcttgcaataaatatcctcagaggcaatgcggcaatggtcttc
acacgtttgcgtgaactcgatgtgcagaattatgaaccatatgctataataggaataatc
ggcttttcccttgcggatatctatagggcaaagcttgcacgttcctctggcaggagcgtt
gcagacgtggctaaagatttttcctatgcgaaaaatagagagtttgcagtaaaaaacgcc
tattccgagtgcggaaatatctcggcggagcgtataagaaaaacgcttgagatactttct
gaaactgaccttatgctcaaaacaaggtcacggggaaaagacggagatatgctcaccctc
gagcaggggcttgcaaggtcaatggcgttaaggtgttag

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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