KEGG T01353: Rvan

Rhodomicrobium vannielii: Rvan_0646

Entry

Rvan_0646 CDS T01353

Definition

malate dehydrogenase

Orthology

K00024

malate dehydrogenase [EC:1.1.1.37]

Organism

rva Rhodomicrobium vannielii

Pathway

rva00020	Citrate cycle (TCA cycle)
rva00620	Pyruvate metabolism
rva00630	Glyoxylate and dicarboxylate metabolism
rva00680	Methane metabolism
rva01100	Metabolic pathways
rva01110	Biosynthesis of secondary metabolites
rva01120	Microbial metabolism in diverse environments

Module

rva_M00009	Citrate cycle (TCA cycle, Krebs cycle)
rva_M00011	Citrate cycle, second carbon oxidation, 2-oxoglutarate => oxaloacetate
rva_M00168	CAM (Crassulacean acid metabolism), dark

Class

Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:rva00020]
Metabolism; Carbohydrate metabolism; Pyruvate metabolism [PATH:rva00620]
Metabolism; Carbohydrate metabolism; Glyoxylate and dicarboxylate metabolism [PATH:rva00630]
Metabolism; Energy metabolism; Methane metabolism [PATH:rva00680]

SSDB

Motif

Pfam:

Ldh_1_N Ldh_1_C UDPG_MGDP_dh_N Glyco_hydro_4 F420_oxidored NAD_Gly3P_dh_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

724915..725886

AA seq 323 aa
MARAKIALIGSGMIGGTLAHLIGLKELGDVVMFDIAEGLPQGKALDLAESAPVDGFNVGF
QGVNDYADIKGADVVIVTAGVPRKAGMSRDDLLEINLKVMEQVGAGIKKYAPDAFVICIT
NPLDAMVWALQRVTGMPKNQVVGMAGVLDGSRFRYFLAREFDVSVEDVTAFVLGGHGDTM
VPLTRYTTVAGIPLPDLIKMNWITHERLNEIVQRTRDGGAEVVKLLKTGSAYYAPAASAI
EMAESYLKDKKRVLPCAAYLTGEYGVKGLYIGVPTVIGAKGMERVIEIDLNTHERLDFNR
SVEAVKNLVEACVRIAPGLAQPA

NT seq 972 nt +upstreamnt +downstreamnt
atggcacgggccaaaatcgcactcatcgggtcgggcatgattggcggtaccctcgcccat
ctgatcggcctcaaggaactcggcgacgtggtcatgttcgacatcgccgagggcttgccc
cagggcaaggcgcttgacctcgccgagtccgcgccggtcgacggcttcaacgtcggcttc
cagggcgtcaacgactacgccgacatcaagggcgcggacgtggtcatcgtgaccgcaggc
gttccccgcaaggccggcatgagccgcgacgaccttctcgaaatcaacctcaaggtgatg
gaacaggtcggcgcgggcatcaagaagtacgcccccgacgccttcgtcatctgtatcacg
aacccgctcgacgccatggtctgggcgcttcagcgggtgaccggcatgccgaagaatcag
gtcgtcggcatggctggcgtgctcgacggctcgcgcttccgctacttcctcgcgcgcgaa
ttcgatgtgtcggtcgaagacgtgacggccttcgtgctcggcggccacggcgacaccatg
gttccgctcacgcgctacaccacggttgctggcatcccgctccccgacctcatcaagatg
aactggatcacgcatgagcgcctgaacgagatcgttcagcgcacgcgcgatggcggcgcc
gaagtcgtgaagctgctcaagaccggctcggcctattacgcgcctgccgcctccgcgatt
gagatggccgaatcctacctcaaggacaagaagcgcgtgctgccttgcgccgcctatctc
accggcgaatatggcgtgaaggggctttatatcggcgtgccgaccgtgatcggtgcgaag
ggcatggaacgcgtgatcgaaatcgatctcaacacgcacgagcgcctcgatttcaaccgc
tccgtcgaggcggtgaagaacctcgtcgaagcttgcgtccgcatcgcgccgggcctcgcc
caacccgcttga

All links

Pathway (10)   
   KEGG PATHWAY (7)   
   KEGG MODULE (3)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RVA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (6)   
   Pfam (6)   
All databases (31)   

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