KEGG T01353: Rvan

Rhodomicrobium vannielii: Rvan_2417

Entry

Rvan_2417 CDS T01353

Definition

ATP dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

rva Rhodomicrobium vannielii

Pathway

rva03410	Base excision repair
rva03420	Nucleotide excision repair
rva03430	Mismatch repair
rva03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:rva03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:rva03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:rva03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:rva03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(2634709..2636292)

AA seq 527 aa
MQAFAALLDRLYYTHATNDKAAVLKAYLARTPDPDRGFAIGVIAGTVTFELFKRALVRDL
VAERVDPVLFDLSYEYVGEMSETVAHIWPRNPHRTILNRLPPLHEAIHEFRSRSKPAIQE
YLALLLDNMTPPERWALLKLGTSTLRIGMSARSVKHVLAEFGGVEVGEIEEVWHAQTPPY
LDLFAWLEGRAPKPQAKDAVTFHPVMLAHAIDDAELAAITPDAFMAEWKYDGIRVQVVST
PAGKALFSRTGDDISGAFPDVLARVGFRGVLDGELIVREGDAIASFNHLQQRLNRKSPDP
KLIAAYPGHVILYDALDIDGRDLRALPLTERKAEMARWFDATRPDGMELAAPLAFASPGD
LQAFRAEAATLASPHIEGLMLKRLDSTYVAGRPKGLWYKWKRDPMLVDAVVMYAQRGTGR
RSSFYSDYTFGLWHDGALSPIGKAYFGFTDEELKELDKWVRHHTVARFGPVREVEKALVF
EVAFDAVHRSTRHKSGVALRFPRINRIRWDKPAREADELSALLKWVD

NT seq 1584 nt +upstreamnt +downstreamnt
atgcaagccttcgccgcccttctcgaccggctctattacacgcatgcgacgaacgacaag
gccgccgtgctgaaggcgtatctcgcgcggacgccagacccggatcgcggctttgccatc
ggcgtcatcgcgggcacggtgacgttcgagctgttcaagcgcgcgctggtgcgcgacctc
gtggcggagcgcgtcgatccggtgcttttcgacctctcctatgagtatgtgggcgagatg
tcggaaacggtggcgcatatctggccgcgcaatccgcatcgcacgatcctgaaccgcctt
ccgccgcttcatgaggcgatccacgaatttcgctcgcgcagcaagcccgctatccaggag
tacctcgcgctgctgctggataacatgacgccgcccgagcgctgggcgctcctgaagctc
ggcaccagcacgctgcgcatcggcatgtcggcgcgctcggtgaagcatgtgctggcggag
ttcggcggcgtggaggtcggcgagattgaggaggtgtggcacgcgcagacgccgccctat
ctcgacctgttcgcgtggctcgaagggcgcgcgccgaagccgcaagcgaaggacgcggtg
acgttccatcccgtgatgctcgcgcacgccatcgacgacgcagagcttgccgcgatcacg
ccggacgccttcatggccgaatggaaatatgacggcatccgcgtgcaggtcgtatcgacg
cccgctggcaaggcgctgttttcgcgcacgggcgatgacatttcgggggcgttcccggat
gtactcgcgcgcgttggctttcgcggcgtgctcgacggtgaactcatcgtgcgcgagggc
gacgcgatcgcgagcttcaaccacctccagcagcggctgaaccgcaagtcgcccgatccg
aagctcatcgcggcctatccgggccatgtcatcctttacgacgcgctcgacattgatggc
cgcgaccttcgcgcgctgccactcaccgagcgcaaggccgagatggcgcgctggttcgat
gcgacgcggcccgacggcatggaactcgccgcgccgctcgcattcgcgtcgccgggtgac
ttgcaggcctttcgcgcggaggcggccacgctcgcctcgccgcatatcgaggggctgatg
ctgaagcggctcgatagcacctatgtcgcggggcggcccaaggggctctggtacaagtgg
aagcgcgacccgatgcttgtagacgccgtggtgatgtacgcccagcgcggcacgggcagg
cgctcgtcgttctactcggactacacctttggtctctggcacgacggcgcgctctcgccc
atcgggaaggcgtatttcggcttcaccgatgaggaactgaaggaactcgacaagtgggtg
cggcatcacacggtggcgcgcttcgggccggtgcgcgaggtggagaaggcgctcgtgttc
gaggtggcgttcgacgctgtgcaccggtcgacgcggcataaatcgggcgtggcgctgcgc
ttcccgcgcatcaaccgcatccgctgggacaagcctgcgcgcgaggcggatgagctgagc
gcgcttctgaagtgggtggattag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-RVA (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (16)   

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