KEGG   Simiduia agarivorans: M5M_03300
Entry
M5M_03300         CDS       T02281                                 
Symbol
rumA
Name
(GenBank) 23S rRNA m(5)U1939 methyltransferase
  KO
K03215  23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]
Organism
saga  Simiduia agarivorans
Brite
KEGG Orthology (KO) [BR:saga00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:saga03009]
    M5M_03300 (rumA)
Enzymes [BR:saga01000]
 2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     M5M_03300 (rumA)
Ribosome biogenesis [BR:saga03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    M5M_03300 (rumA)
SSDB
Motif
Pfam: tRNA_U5-meth_tr Methyltransf_31 Methyltransf_25 TRAM Cons_hypoth95 Methyltransf_11 Methyltransf_32 PCMT Methyltr_RsmB-F UPF0020 Methyltransf_23 Methyltransf_15 Ubie_methyltran RrnaAD Methyltransf_12 MTS NodS DREV Met_10
Other DBs
NCBI-ProteinID: AFU97871
UniProt: K4KFZ0
Position
complement(728747..730087)
AA seq 446 aa
MTRAPVSRRRKPAQKGTGFSLSSPVTIERLGHDGRGIGYCDGKITFVAGALPAETHRVWV
TETKRNYQAGKSHSLESEPSSDRVTPECAHYGVCGGCQLQHMSQAAQVNYKESLLTDQLV
RAGVDLACTHIEPLVADGEWGYRRRARLAVNHKGPVFAGFRTMAGSDLVRINHCPVLSPV
LDRVLNSLQGLMARMRSKTIGHVELTDHSGGPSCLIRLTARPNADEREAFLAFTEAKLYF
QWPGSRDIQDIDEQAADQAETLTIDSYGKSLTFSLDDFIQVNATINHHLIANAMALAEPQ
KHESWLDLFCGMGNFTFALAPYVKRVWGVEAIPEMIEKSRANAVRLGVANTEFLVADLQD
EQQLKKLPDRIDGVLLDPPRAGAKEALVRVVALNPARIVYVSCDPATFARDATYLIQQGY
RLARLQPHDMFPQTMHLETLALFVRR
NT seq 1341 nt   +upstreamnt  +downstreamnt
atgactcgcgcgccggtatcgcgccgtcgcaagccggcccaaaaaggtacaggttttagt
ttaagctcgccggttaccatcgagcgcttggggcacgatggccggggtatcggttactgc
gatggtaaaattacttttgtcgccggcgcattgccagcggaaactcaccgggtctgggtt
accgaaaccaagcgaaattatcaggctggcaaaagtcattcccttgaaagcgagccttcc
tccgacagagtgactcctgagtgtgcgcactatggtgtgtgcggtggctgtcaattgcag
cacatgtcccaagccgcgcaggtcaattataaagaatcgcttttgaccgaccaattggtg
cgcgccggggtggatctggcttgcacccacattgagcccttggttgcggacggcgaatgg
ggctaccggcggcgggcgcgtttggctgttaatcacaaaggccccgtttttgcaggattt
cgaacaatggcgggttcggatctcgtgcggattaatcactgccccgtgctttcgcccgtg
ctggatcgggtgctcaattcgctccaaggtcttatggcacgcatgcgatcgaaaaccatt
gggcatgtggagcttactgatcacagcggcggtccttcctgtctgatccgattaacggcc
agacccaacgctgacgaaagggaagcttttcttgccttcactgaagccaagctatatttc
caatggccggggtcgcgggatattcaggatattgatgagcaggccgctgatcaggccgag
acattgaccatcgattcctacggtaagtcactgacgttttcattggatgatttcattcag
gttaacgccacgatcaatcatcatttgatagctaacgccatggcgttagctgagccccaa
aagcatgagagctggctggatttgttttgtggcatgggtaactttacttttgcattggcg
ccctatgtgaagcgggtgtggggcgtagaggcgattccggaaatgatcgaaaagtcgcgc
gccaatgcggttcggttgggggttgcaaacactgaatttctggtcgccgatttgcaggat
gaacaacagctcaaaaagctaccagatcggattgatggggttttgttggacccgcccagg
gcgggcgcaaaggaggcattggtcagggttgtcgcactgaaccctgcgcgcatcgtttat
gtgtcgtgcgacccagccacatttgcgcgcgatgcaacctatcttatccagcaaggttat
cgtttggcgcggttacagccgcacgatatgtttccccagacgatgcatctggaaactctg
gcgttgtttgtgcgtcgttaa

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Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (12)   
   KEGG ORTHOLOGY (1)   
   RefGene (9)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (19)   
   Pfam (19)   
All databases (37)   

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