KEGG   Simiduia agarivorans: M5M_11375
Entry
M5M_11375         CDS       T02281                                 
Symbol
rho
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
saga  Simiduia agarivorans
Pathway
saga03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:saga00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    M5M_11375 (rho)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:saga03021]
    M5M_11375 (rho)
   03019 Messenger RNA biogenesis [BR:saga03019]
    M5M_11375 (rho)
Transcription machinery [BR:saga03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     M5M_11375 (rho)
Messenger RNA biogenesis [BR:saga03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     M5M_11375 (rho)
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB NACHT AAA_25 AAA_22 Mor ResIII Spore_III_AA AAA
Other DBs
NCBI-ProteinID: AFU99452
UniProt: K4KZU2
Position
2537284..2538543
AA seq 419 aa
MNLTDLKTKPIEELLDIAKEMGLENLARSRKQDIIFNILKRHAKSGEDIYGDGVLEILQD
GFGFLRSADGSFLAGPDDIYVSPSQIRRFNLRTGDSISGKIRPPKEGERYFALLKVNDIN
FDKPENSRNKILFENLTPLFPNQRLVLEAGNGSTEDLTGRIIDLIAPIGKGQRGLIVAPP
KAGKTIMMQNIAQAITRNNPECHLIVLLIDERPEEVTEMQRSVRGEVVASTFDEPPARHV
QVAEMVIEKAKRLVEHKKDVVILLDSITRLARAYNTVIPSSGKVLTGGVDAHALEKPKRF
FGAARNIEEGGSLTIVATALVDTGSKMDEVIYEEFKGTGNQELHLDRKIAEKRVYPAINI
RRSGTRREDLLMKEDEMQRVWILRKLLHDMEDLGATEFLTDKLKDFKTNDEFFLSMKRK
NT seq 1260 nt   +upstreamnt  +downstreamnt
atgaacctgaccgatctgaaaaccaaacccattgaagaactgcttgatatcgccaaagag
atggggcttgaaaacctcgcccgctcgcgcaagcaggacattatctttaacatcctcaag
cgccacgccaaaagcggcgaagacatttacggcgacggggttcttgagattctccaggac
gggtttggtttcctgcgctctgccgatggctctttcctggccggccccgacgacatctac
gtgtcgccgagccagatccgccggttcaacctgcgcacgggtgactccatttcgggcaag
atccggccacccaaagaaggtgaacgctatttcgcgctgctgaaagttaacgacattaac
ttcgacaaaccggaaaactcccgcaacaagatcctgttcgagaacctcacgcccctgttc
ccgaaccagcgcctggtactggaagccggtaacggctccaccgaagacctcaccggccgc
atcatcgacctgattgcgcccatcggcaaaggccagcgcggcctgattgtggccccgccc
aaagccggtaaaaccatcatgatgcagaacatcgctcaggccattacccgcaacaacccg
gaatgccacctgatcgttctgctgatcgatgagcgccccgaagaagtaacagaaatgcaa
cgctcggtgcgcggcgaagtggtcgcctccaccttcgacgagccacctgcccgccacgta
caagtggccgagatggtgatcgaaaaggccaagcgcctggttgaacacaagaaagacgtg
gtgatcctgctggactccattacccgtctggcacgcgcctacaacaccgtgattccgtcc
tccggtaaggtgctgaccggcggtgtggatgcacatgcgctggaaaaacccaagcgcttc
tttggtgccgcgcggaacatcgaagaaggcggcagcctgaccatcgtagccaccgcactg
gtagacaccggttccaaaatggacgaagtgatttacgaagaattcaaaggcaccggcaac
caggaattgcatctggatcgcaagattgcagaaaaacgcgtttaccccgccatcaacatc
cgtcgttccggcacccgccgtgaagacctgctgatgaaagaagatgaaatgcagcgcgtg
tggattctgcgcaaattgctgcacgatatggaagatctgggtgcgaccgaattcctgacc
gacaagctcaaggacttcaagaccaacgatgaattcttcctctcgatgaagcgcaaataa

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (76)   
   KEGG ORTHOLOGY (1)   
   RefGene (73)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (11)   
   Pfam (11)   
All databases (93)   

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