KEGG T00361: Sala

Sphingopyxis alaskensis: Sala_0290

Entry

Sala_0290 CDS T00361

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

sal Sphingopyxis alaskensis

Pathway

sal03410	Base excision repair
sal03420	Nucleotide excision repair
sal03430	Mismatch repair

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:sal03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sal03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:sal03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C DNA_ligase_A_N

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

287765..289417

AA seq 550 aa
MKALAALIDRLIYTRSRNSKLALIADYLRCTPDPDRGWAIAALTESLDFPAVKAGMVRAL
LATRVDEQLFRLSRHFVGDTAETAALLWPEPFQPSPSGEGLGVGAIGLAQGVEPPPQTPP
LKGRGLTVTQAVDALAAASRSDAPAILADLLDRLDADGRYALLKLALGGMRVGVSARLAK
QAFAQAFDVPVDDVEELWHAIPPPYAPLFAWGEGRAERPDLADVAFFRPFMLAHPLEEES
VDLADYAAEWKWDGIRVQIVRGGGETRIYSRGGEEIGAAFPELIAAFDQDAVIDGELLVR
GEVQGGEAASFNALQQRLGRKTVSKKMLADYPAFVRVYDLLAVDGDDLRPLPWTERRRRL
EAFVPRLASSHFDLSQLIEAADFDDLAERRAGARDAAIEGVMLKRRDAPYVAGRRAGLWY
KWKRDPLTADCVMMYAQRGNGRRASFYSDYTFGCWSDAGELLPVGKAYSGFTDEELKWLD
KFVREHTLNRFGPVREVEKSLVLEVAFDSIHSSKRHKSGLAMRFPRISRIRRDKPAEEAD
RIATLRAMVT

NT seq 1653 nt +upstreamnt +downstreamnt
gtgaaggcgcttgccgccctgatcgaccggctgatctacacgcgctcgcgcaacagcaag
ctggcgctgattgccgattatctgaggtgcacgcccgaccccgatcgtggctgggcgatc
gcggcgctgaccgagagcctcgactttccggcggtgaaggcggggatggtgcgtgcattg
ctggcgacgcgggtcgatgagcaattgttccggctgtcgcgccattttgtgggcgacacg
gccgagacggcagcgctgctgtggcctgaaccttttcagccctccccttcaggggagggg
ctgggggtgggggccatcggccttgcacaaggtgtcgagcccccaccccaaacccctccc
ctgaaggggaggggcttaactgtcacccaagccgtcgacgcgctggcggcggcaagccgc
agcgatgcgcccgctatcctcgccgatctgctcgaccggctcgacgccgatgggcgttat
gcgctgctcaagctcgcgctcggcgggatgcgcgtcggcgtgtcggcgcggctcgccaaa
caggcgtttgcgcaggccttcgacgtgcctgtcgacgatgtcgaggagctgtggcacgcg
atcccgccgccctatgcgccactctttgcatggggcgaggggcgcgctgagcgccccgac
cttgccgatgtcgcctttttccgccccttcatgctcgcgcatccgctggaggaggaaagc
gtcgatcttgccgactatgccgccgaatggaaatgggacggcatccgcgtccagatcgtg
cgcggcggcggcgaaacgcgcatctacagccgcggcggtgaggaaatcggcgccgctttc
cccgaactgatcgcggcgttcgatcaggatgcggtgatcgatggcgaattgctcgtgcgt
ggcgaggtgcagggcggggaagcggcaagcttcaacgcgttgcaacaacgcctcggccgc
aagaccgtttcgaagaagatgctcgccgactatccggccttcgtgcgcgtctatgacctg
ttggcggttgatggcgacgacctgcgccctctgccatggaccgaacgacggcggcggctg
gaggcgttcgtgccgcgcctcgccagcagccatttcgacctgtcgcaactgatcgaggcg
gccgatttcgacgacctcgccgaacgccgcgcgggcgcgcgcgatgccgcgatcgagggg
gtgatgctcaagcgccgcgacgcaccctatgtcgcgggccgccgcgcgggactctggtat
aaatggaaacgcgacccgctcaccgccgattgcgtgatgatgtatgcgcagcgcggtaac
gggcggcgcgcgagcttctattcggactataccttcggctgctggtccgacgcgggcgaa
ttgctgccggtgggcaaggcctattcgggctttaccgacgaagagctgaaatggctcgac
aagttcgtgcgcgaacacacgctgaaccgtttcgggccggtgcgcgaagtcgaaaagtcg
ctcgtgctcgaagtcgccttcgattcgatccacagcagcaagcgccacaaatcagggctc
gccatgcgtttcccgcgcatttcgcgcatccgccgcgacaagcccgcggaagaggccgac
cggatcgcgaccttgcgggcgatggtgacctga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SAL (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (15)   

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