KEGG   Sphingopyxis alaskensis: Sala_2335
Entry
Sala_2335         CDS       T00361                                 
Name
(GenBank) ATP-dependent DNA helicase RecQ
  KO
K03654  ATP-dependent DNA helicase RecQ [EC:5.6.2.4]
Organism
sal  Sphingopyxis alaskensis
Pathway
sal03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sal00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Sala_2335
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sal03019]
    Sala_2335
   03400 DNA repair and recombination proteins [BR:sal03400]
    Sala_2335
Enzymes [BR:sal01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.4  DNA 3'-5' helicase
     Sala_2335
Messenger RNA biogenesis [BR:sal03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     Sala_2335
DNA repair and recombination proteins [BR:sal03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Sala_2335
SSDB
Motif
Pfam: RQC HRDC DEAD Helicase_C RecQ_Zn_bind HHH ResIII HHH_5
Other DBs
NCBI-ProteinID: ABF54044
UniProt: Q1GQM8
Position
complement(2463004..2464785)
AA seq 593 aa
MSSPADALLPLLKSTFGFDAFRGRQGEVVARVMAGERTLAVMPTGAGKSLTYQLPAVALE
GCVVVVSPLIALMHDQLRGARAAGIRAASLTSVDADFADTRQAYRDGQLDLLYITPERAT
GEGFRSLMEARAPALFAIDEAHCVSEWGHDFRPDYRLLRPLLDAFPDVPRLALTATADKH
TREDILVQLGIPAEGLVLAGFDRPNIRYRVTPRVSPAKQLADFIAANPGPGIVYCPTRDG
TERMAERLAAATGRSVAAYHAGLDPERRARVQHDFVASEDGIVTATVAFGMGIDKPDVRF
VAHAGLPKSIESYYQETGRAGRDGDPAEALMLWAADDFARARARLSELPEARVAAERARL
NALAALVETAQCRRALLLRHFGENPPTRCGNCDTCLDPPKQVDATVLAQKLMSAVYRTGQ
SFGAGHVEAVLTGRSDERVVSRGHDKLSVFGIVEGEEARLIKPLVRTLVAREALQATEHG
GLMFGPAGRAVMKGEAPVLIAEPPVKRTQRASRSDRAAANPVGDPLFEALRGIRRELAAE
AGVPPYVVFHDAVLRAMASERPATRSDLAAIPGVGAKKLEAWGDAFLDVIRQF
NT seq 1782 nt   +upstreamnt  +downstreamnt
atgtcctctcccgccgacgcgctcctcccgctgctcaaatccaccttcggcttcgacgcc
tttcggggccgtcagggcgaggtggtcgcgcgggtgatggcgggcgagcgcacgctggcg
gtgatgccgacgggggcaggaaaatcgctgacctatcaattgcccgctgtggcgctggag
ggctgcgtcgtcgtcgtgtcgccgctgatcgcgctgatgcacgaccagctgcgcggcgcg
cgcgcggcgggaataagagcagcgtcgctcaccagcgtcgatgccgatttcgccgacacg
cggcaggcctatcgcgacgggcagctcgaccttctctatatcacgcccgagcgcgcgacg
ggcgagggcttccgctcgctcatggaagcgcgcgcacctgcgctgttcgcgatcgacgag
gcgcattgcgtttcggaatgggggcatgatttccgccccgattaccggctgctcaggccg
cttctcgatgcctttcccgacgttccgcggctcgcgctgacggcgaccgccgacaagcat
acgcgcgaggatattctcgtccagctgggcattccggccgaggggctggtgctcgcgggc
ttcgaccggccgaatatccgctatcgggtaacaccgcgggtgagcccggcgaagcagctg
gccgatttcatcgccgccaatccggggccggggatcgtctattgcccgacgcgcgacggg
accgaacgcatggccgaaaggctcgccgccgcgacggggcgcagcgttgccgcctatcac
gccgggctggaccccgagcggcgcgcgcgggtgcagcatgattttgtcgcgtcggaggac
ggcatcgtcacggcgacggtcgccttcggcatggggatcgacaagcccgacgtgcgtttc
gtcgcgcacgcgggcctgccgaaatcgatcgaaagctattatcaggaaacgggccgcgcg
gggcgcgacggcgacccggccgaggcgctgatgctgtgggccgccgatgattttgcgcgc
gcccgcgcgcgcttgtccgaactgcccgaggcgcgcgtcgcggccgaacgcgcgcgcctc
aatgcgctcgcggcgctggtcgaaacggcccagtgccgccgcgcgctgctgctccgccat
ttcggcgaaaatccgcccacacgctgcggcaattgcgacacctgcctcgacccgccgaaa
caggtcgatgcgacggtgctcgcgcagaaattgatgagcgcggtctatcgcacgggtcag
agtttcggcgcgggccatgtcgaggcggtgctgacggggcggagcgacgaacgggtcgtc
agccgcgggcacgacaaattgtcggtgttcggaatcgtcgagggcgaggaagcgcggctg
atcaagccgctggtccgcacgctcgtcgcgcgcgaggcgttgcaggcgaccgagcatggc
gggctgatgttcggccccgccggccgcgcggtgatgaagggcgaagcgccggtgctgatc
gccgagccgccggtgaaacgtacgcagcgtgcgagccgcagcgaccgcgcggcggccaat
ccggtcggcgatccgctgttcgaggcactgcgcggcatccggcgcgagcttgccgccgag
gcgggggtgccgccctatgtcgtgttccacgacgcggtgctgcgcgcgatggcgagcgag
cgccccgcgacgcgcagcgatcttgccgcgattcctggcgtcggcgccaaaaaactggag
gcgtggggcgatgcgtttctggatgtgatccggcagttctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (9)   
   KEGG ORTHOLOGY (1)   
   RefGene (6)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (25)   

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