KEGG   Streptomyces alboflavus: SMD44_p10019
Entry
SMD44_p10019      CDS       T05221                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
salf  Streptomyces alboflavus
Pathway
salf03030  DNA replication
salf03410  Base excision repair
salf03420  Nucleotide excision repair
salf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:salf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    SMD44_p10019
   03410 Base excision repair
    SMD44_p10019
   03420 Nucleotide excision repair
    SMD44_p10019
   03430 Mismatch repair
    SMD44_p10019
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:salf03032]
    SMD44_p10019
   03400 DNA repair and recombination proteins [BR:salf03400]
    SMD44_p10019
Enzymes [BR:salf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     SMD44_p10019
DNA replication proteins [BR:salf03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     SMD44_p10019
DNA repair and recombination proteins [BR:salf03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     SMD44_p10019
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     SMD44_p10019
   MMR (mismatch excision repair)
    DNA ligase
     SMD44_p10019
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      SMD44_p10019
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 HHH_5 BRCT PTCB-BRCT zf_Rg
Other DBs
NCBI-ProteinID: ATM24518
UniProt: A0A291W3C1
Position
pMDJK44.1:13004..15070
AA seq 688 aa
MTIPTTELTLASQHEYEQAVLELSQAARAYHGEGDSPLDDATYDQRLRAVAAWEAAHPDR
VSEDSPTQLVGAGPASAGDVAHTTRLLSLGNVFSPGDLLAWGDSVDRRLGRPAAGGWATE
VKLDGNAVAARYHGGRLTQIIQRGSGSHGEDISHVIGTIVGLPSRLLKPVTVEVRGEVLF
SRDQFEHANEVRLAHGAEAFANARNGASGTLRARNRSYRLPLTFYAYSAVDLPGASFLPR
GASHTEVLEVIAAAGVQTIADTPTGVRVVATLAEAQQRIEEIAAQRASLPFEIDGVVVKA
NDASEQEAAGNGSRTPHWAIAFKLPAVERMTVLKGVTWEVGRTGIIAPTAELEPVEVDGS
TVSRATLHNPADIRRRDLHLGDTVTVHKAGDVIPKIEAAVAALRPADAKLVPLPEQCPNC
GGAIDKRQERWRCAKGTACRLPALIEYAAERDKLDIDGMGKKYVAALVADGAVADLGDLF
SLSVEQLTAASGSAKRGVKLAQQIEQAKALPLNRILCALGILGTGRSMSRRIAVHFGSME
NIRGADAAALRQVEGIGAEKAPVIVEQMAELAPVIEKLIAAGVNMSEPSEPQETSGAAAV
QRPLEAMTVVVTGKMTGPLDGWGRGDMNALIEKAGGRAGSSVTARTAYLVAAPAAGGKLS
TKAVKAQELGVKVLTPEEFAELVSVYLG
NT seq 2067 nt   +upstreamnt  +downstreamnt
atgaccatccccaccaccgaactgacgctggccagtcagcacgagtacgagcaggccgtg
ctcgaactgagccaggccgcccgcgcgtaccacggcgagggtgacagcccgctggacgac
gcgacgtacgaccagcgccttcgcgcggtcgcggcctgggaggcggcgcaccccgaccgg
gtcagcgaggactcaccgacccagctggtcggcgcaggcccggcctcggcgggcgacgtc
gcccacaccacccggctgctctccctcggcaacgtcttcagccccggggacctcctcgcc
tggggagactcggttgaccgcaggctgggccgtccggccgccggcggctgggccaccgag
gtcaagctggacggcaacgccgtcgccgcccgctaccacggcgggcgcctcacacagatc
atccagcgcggctccggaagtcacggcgaggacatcagccacgtcatcggcaccatcgtc
ggtctgccctcccgactcctcaagccggtgaccgtcgaggtgcgcggcgaagtgctcttc
agccgcgatcagttcgagcacgccaacgaggtgcgcctggcgcacggcgccgaggccttc
gccaacgcgcgcaacggcgcctcgggcacactgcgcgcccgcaaccgcagttaccgtctc
ccactgaccttctatgcctacagtgcggttgaccttcccggcgcgtcgttcctgccccgg
ggcgccagccacaccgaggtcctggaggtgatcgccgccgcaggggtccagacgatcgcg
gacacgcccaccggggtccgtgtggtcgccaccctggccgaggcgcagcagcggatcgag
gagatcgccgcgcagcgtgcttcgctgcctttcgagatcgacggtgtcgtcgtgaaggcg
aatgacgcctctgagcaggaggcggccgggaacgggagcaggacgcctcactgggccatc
gctttcaagctgcccgcggtcgagcgcatgaccgtgctcaagggtgtgacctgggaggtc
gggcggaccggcatcatcgcgccgaccgctgagctggagccggtcgaggtggacggcagt
accgtctcgcgtgccaccctccacaaccccgcggacatccggcgccgtgatctccacttg
ggcgacaccgtgaccgtccacaaggcgggcgatgtgattcccaagatcgaggctgcggtg
gcggccttgcgaccggcggacgcgaagctggtgccgctgccggagcagtgcccgaactgc
ggcggcgcgatcgacaagcggcaggagcgctggcgctgtgcgaagggcaccgcgtgccgt
ctgcccgccctgatcgagtacgccgccgagcgtgacaagctcgacatcgacggcatgggc
aagaagtacgtcgccgcgctcgtcgccgacggtgcggtcgccgacctcggagacctgttc
agcctctcggtcgagcagctgactgcggcctcgggcagtgccaagcggggcgtgaagctg
gcccagcagatcgagcaggccaaggcgctgccgctcaaccggattctctgcgcgctcggg
attctggggacggggcgcagcatgtcccgccggatcgcggtgcacttcggctccatggag
aacatccgcggggccgacgcggcagcgctgcggcaggtcgagggcatcggcgcggagaag
gcgccggtcattgtcgagcagatggccgagctggcgccggtcatcgagaagctgatcgct
gcgggggtcaacatgtccgagccgtccgagccgcaggagacgtccggtgccgcagccgtg
caacggcccttggaggcgatgaccgtggtcgtcaccgggaagatgaccggtccgctagac
ggatggggtcggggcgacatgaacgcgctgatcgagaaggccggaggccgggcgggcagc
agcgtcaccgccaggacggcctacctggtcgccgcgcccgctgcgggcggcaagctcagc
acgaaggccgtcaaggcgcaggagctgggcgtgaaggtgctcacgcccgaagagttcgcc
gagttggtctccgtgtacctcggctga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (27)   

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