KEGG   Streptococcus anginosus SA1: DK43_01355
Entry
DK43_01355        CDS       T03658                                 
Name
(GenBank) ribonuclease J
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sans  Streptococcus anginosus SA1
Pathway
sans03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sans00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    DK43_01355
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sans03019]
    DK43_01355
Messenger RNA biogenesis [BR:sans03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     DK43_01355
SSDB
Motif
Pfam: RNase_J_C Lactamase_B RMMBL Lactamase_B_2 DUF4453 Lactamase_B_6
Other DBs
NCBI-ProteinID: AIK77041
Position
complement(255532..257214)
AA seq 560 aa
MSYTLKSEEVGVFAIGGLGEIGKNTYGIEYQDEIIIVDAGIKFPEDDLLGIDYVIPDYSY
IVENIDRIKGVLITHGHEDHIGGIPFLLKQANVPIYAGPLALALIRGKLEEHGLLRDAKL
YEINQNTELQFKNLKATFFRTTHSIPEPLGIVIHTPQGKIVCTGDFKFDFTPVGEPADLH
RMAALGEDGVLALLSDSTNAEIPTFTNSEKVVGQSIMKIIEGIHGRIIFASFASNIFRLQ
QAADAAVKTGRKIAVFGRSMEKAIVNGIELGYIKTPKGTFIEPNEIKDYPANEILIMCTG
SQGEPMAALSRIANGTHRQVQLQPGDTVIFSSSPIPGNTTSVNKLINTISEAGVDVIHGK
INNIHTSGHGGQQEQKLMLRLIKPKYFMPVHGEYRMQKVHAGLAMDTGIPKKNIFIMSNG
DVLALTANSARIAGSFNAQDIYVDGNRIGEIGAAVLRDRRDLSEDGVVLAVATVDFKSKM
ILAGPDILSRGFIYMRESGDLIRHSQRILFNAIRIALKNKDASIQSVNGAIVNALRPFLY
ENTEREPIIIPMILTPDEEI
NT seq 1683 nt   +upstreamnt  +downstreamnt
atgtcatatactttaaaatccgaagaagtcggtgtatttgccattggtggtttaggagaa
atcgggaaaaatacctacgggattgaataccaagatgagattatcatcgttgatgcaggg
attaaatttcctgaagatgacctcttagggattgattatgtcattcctgactattcttat
atcgtagaaaatattgaccgtatcaaaggagtgttaattactcacggtcatgaagaccac
atcggagggattcccttccttctcaagcaagcaaatgttcctatttatgctggaccactt
gcccttgcactgattcgtggtaaattggaagagcacggacttttacgtgacgctaaactc
tacgaaatcaatcaaaataccgaacttcaatttaaaaatttaaaagcaaccttcttccgc
acaactcactccatcccagagcctttgggaattgtcatccacacacctcaagggaaaatt
gtttgtacgggtgacttcaagtttgactttacacctgttggcgagccagcagatttgcat
cgaatggcagcacttggtgaagatggtgttttagcacttctttctgactccaccaatgca
gaaattccaactttcacaaattccgaaaaagtcgttggtcagtctatcatgaaaatcatt
gaaggcattcacgggcggattatttttgcctcctttgcctcaaatatcttccgtctccaa
caagctgcggatgctgcggttaaaactggccggaaaattgctgtttttggacgttcaatg
gaaaaagccattgtcaacggaattgaactaggttatatcaaaaccccaaaagggacgttc
attgaaccaaatgaaattaaagactatcccgcaaacgaaatcctaatcatgtgtacagga
agtcagggggaaccgatggcagccctttcacgcattgcgaatggaacccatcgtcaagtc
caactccaaccaggtgatacagtgattttctcttctagtcctatccccggaaatactact
agtgtcaataagctcatcaacaccatttcagaagctggcgttgatgttatccatggaaaa
atcaataacatccatacatctggacacggtggacaacaagagcaaaaattgatgctccgt
ttgataaaacctaagtatttcatgccagtccatggtgaataccgcatgcaaaaagttcat
gctggacttgcaatggatacaggcatccctaaaaagaatatctttatcatgagtaatgga
gacgtccttgctttaactgccaattcggctcgcatcgcaggaagtttcaatgcccaagat
atttatgttgacggtaatcgtatcggagaaatcggtgctgcagtcctccgcgacagacgt
gacctttccgaagatggcgttgtccttgcagtagctaccgttgactttaaatcaaaaatg
attttggctggtcccgatatccttagtcgcggttttatctatatgcgtgaatcaggcgat
ctcattcgtcacagccagcgtattcttttcaatgcgattcgtattgcattaaaaaataaa
gatgctagcattcagtcagtcaatggtgctatcgtaaatgctctcagaccatttttatat
gaaaacacggagcgtgagcccattatcatcccaatgattttaacaccagatgaagaaatc
taa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (6)   
   Pfam (6)   
All databases (13)   

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