KEGG T00613: Sare

Salinispora arenicola: Sare_1489

Entry

Sare_1489 CDS T00613

Gene name

ligC

Definition

ATP-dependent DNA ligase

Orthology

K01971

DNA ligase (ATP) [EC:6.5.1.1]

Organism

saq Salinispora arenicola

Pathway

saq03410	Base excision repair
saq03420	Nucleotide excision repair
saq03430	Mismatch repair
saq03450	Non-homologous end-joining

Class

Genetic Information Processing; Replication and repair; Base excision repair [PATH:saq03410]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:saq03420]
Genetic Information Processing; Replication and repair; Mismatch repair [PATH:saq03430]
Genetic Information Processing; Replication and repair; Non-homologous end-joining [PATH:saq03450]

SSDB

Motif

Pfam:

DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme LZ_Tnp_IS481

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

complement(1715823..1716932)

AA seq 369 aa
MKLPISPPVEPMLAKSVARIPTAPGMTYEPKWDGFRCIVFRDGDEVELASRGGKLMTRYF
PEVVEQARRQLPERCAVDGELIVIRRDGPGGQPRLDFELLAQRIHPAASRVRLLAETTPA
DFVAFDLLALADESFLDRPYPDRRSRLEAALGGVAPPMHVTQVTTDPATAHRWFDRFEGA
GLDGLIAKPADLPYEPGKRLMFKVKHTRTADVVVAGFRWHKSGPVVGSLLLGLYDDAGVL
HHVGVSASFPMARRKELLDELEPYRGAGADHPWAHGDHQRGQRIPGGVSRWTGTKNLEWE
PLRPELVVEVSYDAMEGDRFRHTAQFVRWRPDRKPRSCRYDQLDRPVRFDVDQVLRGDPA
SVGPASGPE

NT seq 1110 nt +upstreamnt +downstreamnt
gtgaagctgccgatcagtccgccggtcgagccaatgctcgccaagagcgtggcacggatt
cccaccgcgcccgggatgacatacgagccaaagtgggacggctttcggtgcatcgtgttc
cgcgacggtgacgaggtcgagttggccagccggggcggcaagttgatgacgcgctacttc
cccgaggtggtcgagcaggcccgccgacagttgccggagcgctgcgcggtcgacggggag
ctgatcgtgatccggcgcgacgggcccggcgggcagccccggctggacttcgagctgctg
gcccagcgcatccacccggccgcctcccgggtacgcctgctggccgagaccacacccgcg
gatttcgtggcgttcgatctactcgccctcgccgacgagtccttcctcgaccggccgtac
ccggaccgacggtcccggctggaggcggcgttgggcggcgtcgcgccaccgatgcacgtc
acgcaggtcaccaccgacccggccaccgcgcaccgctggttcgaccggttcgagggtgcg
gggctggacggcctgatcgccaagccggccgacctgccgtacgagccgggcaaacggctg
atgttcaaggtcaagcacacgcggacagccgatgtcgtggtggcgggtttccgctggcac
aaatccggcccggtggtcgggtcactcctgctcggcctctacgacgatgccggagtcctg
catcatgtaggggtgagcgcgtcgttcccgatggcacgccgcaaggagctgttggacgag
ttggagccataccggggtgccggtgccgaccatccctgggcgcacggcgaccaccaacgc
ggccagcgcattccgggtggggtcagccggtggaccggcacgaaaaacctggagtgggaa
ccgctgcggccggagttggtggtcgaggtgagctacgacgcgatggagggtgaccggttc
cggcacaccgcccaattcgtccgttggcgcccggaccgcaagccccgatcctgccgctac
gaccagctcgaccgcccggtccggtttgatgtggatcaggtgctccggggcgatccggca
agcgtcggccccgcgtccgggccggagtag

All links

Pathway (4)   
   KEGG PATHWAY (4)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SAQ (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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