KEGG   Salmo salar (Atlantic salmon): 100286406
Entry
100286406         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(I) chain
  KO
K06236  collagen type I alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04510  Focal adhesion
sasa04512  ECM-receptor interaction
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    100286406
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    100286406
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    100286406
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    100286406
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   100286406
SSDB
Motif
Pfam: Collagen COLFI VWC
Other DBs
NCBI-GeneID: 100286406
NCBI-ProteinID: XP_014059932
UniProt: A0A1S3S6G4
Position
ssa06:41487399..41509068
AA seq 1449 aa
MFSFVDIRLALLLSATVLLARGQGEDDRTAGSCTLDGQFYNDRDVWKPEPCQICVCDSGT
VMCDEVICEDTSDCPNPVIPHDECCPICPDDGFQEPKVEGPQGDRGAKGEPGPAGFPGND
GIPGQPGLPGPPGPPGPPGLGGNFSPQMSGGFDEKSGGGMSMPGPMGPMGPRGPPGPPGS
SGPQGFTGPPGEPGEAGSSGPMGPRGPAGPPGKNGDDGESGKPGRPGERGASGPQGARGF
PGTPGLPGIKGHRGFSGLDGAKGESGPAGPKGEAGASGENGAAGAMGPRGLPGERGRAGP
NGAAGARGNDGAAGAAGPPGPTGPAGAPGFPGGPGAKGEVGAQGARGGEGPQGSRGEAGN
PGPAGAAGPAGNNGADGNPGTKGAPGSSGIAGAPGFPGPRGPPGPQGAGGAPGPKGNTGE
VGATGAKGEAGAKGESGPAGVQGPAGPAGEEGKRGGRGEPGSAGARGAPGERGAPGSRGF
PGSDGAAGPKGGPGERGGAGVAGAKGNTGEPGRNGEPGMPGSKGMTGSPGSPGPDGKTGP
SGAGGQDGRPGPPGPVGARGQPGVMGFPGPKGAAGEGGKPGERGVMGPVGAVGAPGKDGD
VGAPGAPGAAGPSGERGEQGAGGPPGFQGLPGPQGAIGETGKPGEQGLPGEGGAPGAAGS
RGDRGFPGERGAPGPSGPAGARGSPGSAGNDGAKGEAGAAGAPGGQGPPGLQGMPGERGA
GGLPGLKGDRGDQGVKGADGAGGKDGIRGMTGPIGPNGPAGSPGDKGETGAPGPGGPTGA
RGAPGERGESGAPGPAGFAGPPGGDGQPGAKGEAGDNGAKGDGGAQGPAGPTGAPGPQGP
AGNTGAKGARGAAGPPGATGFPGAAGRVGPPGPSGNNGPPGPPGPGGKEGQKGNRGETGP
SGRPGELGAAGPPGAQGEKGQPGADGPNGPAGTPGPQGIGGQRGIVGLPGQRGERGFPGL
PGQLGEPGKQGPGGPSGERGPPGPMGPPGLAGAPGESGREGTPGNEGSSGRDGAAGPKGE
RGESGAAGASGAPGPPGAPGPVGPAGKSGDRGESGPAGPAGIAGPAGPRGPSGPAGARGD
KGEAGEAGERGMKGHRGFTGMQGPSGPAGPSGESGPAGASGPAGPRGPSGSAGAAGKDGM
SGLPGPIGPPGPRGRSGEMGPSGPPGPPGPPGPPGPPGGGFDMGFIAQPAQEKAPDPFRH
FRADDANVMRDRDLEVDTTLKSLSQQIENIRSPEGTKKNPARTCRDLKMCHPDWKSGEYW
IDPDQGCTQDAIKVYCNMETGETCVYPTEAEIPKKSWYTSKNIKEKKHVWFGEAMTDGFQ
FEYGSEGSSAQDVNIQLTFLRLMATEASQNITYHCKNSIAYMDQQSGNLKKSLLLQGSNE
IEIRAEGNSRFTYSVTEDGCTSHTGAWGKTVIDYKTTKTSRLPIIDIAPMDVGAPNQEFG
IEVGPVCFL
NT seq 4350 nt   +upstreamnt  +downstreamnt
atgttcagctttgtggatattcggttagcgctgttgctcagcgcaacagtgcttttggca
agaggacaaggcgaggacgatcgcaccgccggcagctgtacgttggacggtcaattctac
aacgacagagatgtctggaaacccgagccatgccagatctgcgtgtgcgatagcggcacc
gtcatgtgcgacgaagttatctgtgaggacacatccgactgccccaatccagtgatcccc
cacgacgaatgctgccccatctgccccgacgacggcttccaggagccaaaggttgaggga
ccccagggtgatcgcggagccaagggagagccaggacctgctggtttccccggcaacgat
ggtattcccggccagcccggccttcctggacccccaggcccccctggaccccctggtctt
ggcggaaacttctcccctcagatgtctggtggttttgatgagaagagcggcggtggcatg
tccatgcccggccccatgggccccatgggtcctcgtggtccccctggacctcctggttca
agtggacctcagggtttcactggcccccctggtgagcctggtgaggctggttcttctggt
cccatgggcccccgtggtcctgctggtccccctggcaagaacggagatgatggtgagtct
ggcaagcctggtcgccccggtgagcgtggagcttccggcccacagggagctcgtggcttc
cccggaacccccggccttcccggcatcaagggacacagaggattcagcggtcttgatgga
gctaagggggagtctggccctgccggacccaagggagaggctggtgcatccggtgagaac
ggagccgctggagccatgggaccccgtggtctgcctggtgagagaggccgtgctggtccc
aacggagctgctggtgctcgtggtaacgatggtgctgctggtgctgctggtcctcctggc
cccactggccccgctggtgcccctggtttccccggtggccctggagccaagggagaggtt
ggtgcccagggagctcgtggtggcgagggaccccagggatcccgtggagaggctggtaac
cccggacccgctggcgctgctggccctgctggaaacaacggtgctgatggaaaccccggt
accaagggtgcccctggttcttctggtattgctggcgctcctggcttccctggaccccgt
ggaccccccggaccccagggtgctggtggagctcccggacccaagggtaacactggtgag
gttggtgctactggagccaagggagaggctggtgctaagggagagtctggccccgctgga
gtccagggacccgccggccctgctggtgaggaaggcaagagaggaggccgtggtgagccc
ggtagtgctggtgcccgtggagcccccggcgagcgcggtgcccctggtagccgtggtttc
cctggttctgatggagctgctggccccaagggtggccctggtgagcgtggtggtgctgga
gttgctggagctaagggtaacactggtgagcctggccgcaacggcgagcctggtatgcct
ggatccaagggtatgactggtagccctggcagccctggtcccgatggcaagactggcccc
tctggtgccggtggtcaagatggtcgccccggacctcccggccccgttggagccagaggc
cagcccggagtcatgggattccccggacctaagggagccgcaggtgagggtggcaagcct
ggtgagagaggagtcatgggacccgttggtgctgttggcgctcccggcaaagatggtgat
gttggtgctcctggtgctcctggtgctgccggaccttctggagaacgaggcgagcaggga
gccggtggcccccctggattccagggacttccaggaccccaaggtgctattggtgagact
ggaaagcccggagagcagggtcttcccggtgagggtggtgcccctggtgccgctggatcc
agaggtgacagaggtttccccggtgagcgtggtgcccctggcccatctggacccgctggt
gcccgtggctctccaggctctgctggtaacgatggtgctaagggagaggctggtgccgca
ggtgcccccggtggccagggaccccctggcctgcagggaatgcccggagagcgtggtgct
ggtggtctgccaggtctgaagggagacagaggtgaccaaggagtcaagggtgctgatggc
gccggtggtaaggatggcatccgtggtatgactggccccatcggacccaacggccctgct
ggctctcctggtgacaagggagagactggcgctcctggacctggtggccctactggtgcc
cgtggtgcacctggtgagcgtggtgagtctggtgcccctggacccgctggattcgctggg
cctcctggtggtgatggtcagcctggtgctaagggagaggctggagataacggtgccaag
ggtgacggtggtgcccagggacctgctggacctactggagcccctggacctcagggtccc
gctggaaacaccggagctaagggcgcccgtggtgctgctggtccccctggtgccactggt
ttccctggtgctgctggtagagtcggacctcccggcccatctggcaacaacggacccccc
ggacccccaggccctggtggaaaggaaggacaaaagggtaaccgtggtgagactggcccc
tccggtcgtcctggtgagcttggcgctgccggaccccctggtgcccagggagagaaggga
cagcctggtgcagatggtcccaatggacccgctggaactcccggacctcagggtattggt
ggacagcgtggtattgttggtctgcctggacagagaggcgagcgcggtttccccggcctc
cccgggcaactgggagagcctggcaagcagggacctggcggcccctctggtgagcgtgga
ccccccggacccatgggaccccctggactggctggagcacctggtgagtctggtcgtgag
ggaactcctggtaacgagggatcttctggtcgcgatggtgctgctggacccaagggagag
cgtggtgagtctggtgctgctggtgcttccggtgcccccggaccccctggcgcccctgga
cccgtcggccctgctggaaagtctggtgaccgtggagagtctggtcctgctggccccgct
ggtattgctggccctgctggtccccgtggcccatctggacccgctggagctcgtggagac
aagggagaggctggcgaggctggagagagaggcatgaagggacatagaggattcactggc
atgcagggaccctctggccccgccggaccatctggagagtcaggacctgctggagcctct
ggccccgctggacctagaggaccttctggatctgctggtgccgccggtaaagatggtatg
agcggtctgcccggccccatcggacctcccggaccccgtggtcgctctggagagatggga
ccctctggaccccctggccctcccggtccccctggcccccccggacctcccggcggtgga
ttcgacatgggcttcattgctcagcctgctcaggagaaggcccccgatcccttccgtcac
ttccgtgccgacgacgccaacgtgatgcgcgaccgcgacctggaggtagacaccactctc
aagagcctgagccagcagattgagaacatccgctctcccgagggcaccaagaagaacccc
gcccgcacctgcagagacctgaagatgtgccaccccgactggaagagcggcgagtactgg
atcgaccctgaccagggctgcacccaggatgccatcaaggtttactgcaacatggagacc
ggcgagacctgcgtctaccccaccgaggccgaaatccccaagaagagctggtacaccagc
aagaacatcaaggagaagaagcacgtctggttcggcgaggcaatgaccgatggcttccag
tttgagtatggcagtgagggttccagcgctcaggatgttaacatccagctgaccttcctg
cgccttatggccactgaggccagccagaacatcacataccactgcaagaacagcatcgcc
tacatggaccagcagtccggcaacctcaagaagtccctgctgctccagggctccaacgag
atcgagatcagagccgagggcaacagccgcttcacatacagcgtcaccgaggacggctgc
acgtcgcacactggtgcatggggcaagacagtcatcgactacaagacaacgaaaacatcc
cgtctgcctattattgacatcgctcctatggacgttggtgcacccaatcaggaatttggc
attgaagttggcccagtctgcttcttgtaa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (72)   
   KEGG ORTHOLOGY (1)   
   RefGene (68)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (7)   
   RefSeq(nuc) (1)   
   GenBank (3)   
   EMBL (3)   
Protein domain (3)   
   Pfam (3)   
All databases (90)   

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