KEGG   Salmo salar (Atlantic salmon): 100302577
Entry
100302577         CDS       T04363                                 
Symbol
ddx58, rig-i
Name
(RefSeq) DExD/H-box helicase 58
  KO
K12646  ATP-dependent RNA helicase DDX58 [EC:5.6.2.6]
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04622  RIG-I-like receptor signaling pathway
sasa04623  Cytosolic DNA-sensing pathway
sasa05168  Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09150 Organismal Systems
  09151 Immune system
   04622 RIG-I-like receptor signaling pathway
    100302577 (ddx58)
   04623 Cytosolic DNA-sensing pathway
    100302577 (ddx58)
 09160 Human Diseases
  09172 Infectious disease: viral
   05168 Herpes simplex virus 1 infection
    100302577 (ddx58)
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04054 Pattern recognition receptors [BR:sasa04054]
    100302577 (ddx58)
Enzymes [BR:sasa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     100302577 (ddx58)
Pattern recognition receptors [BR:sasa04054]
 Cytoplasmic pattern recognition receptors
  RIG-I-like receptors
   100302577 (ddx58)
SSDB
Motif
Pfam: RIG-I_C CARD_2 RIG-I_C-RD DEAD ResIII Helicase_C AAA_19 PhoH IstB_IS21 AAA_22 AAA_25
Other DBs
NCBI-GeneID: 100302577
NCBI-ProteinID: NP_001157171
UniProt: C7C1L7
Position
ssa18:70356478..70372550
AA seq 962 aa
MYESEKRNLLRCSEYLVHILRPSYVKGFMTTYLQPEVAERILSEESKSVTSAAQVFLDQV
CLLDELGWYQALLDALDAEDYKGLCEALKKWDFQILESTKIHRVLLERIEPSFTKMIKPR
DLLLHLGDCLRKREYEEIQAIENQKGPIAAAERLTDCLKRSDKQNWFKLLKSALLSCDLT
DALQLLEPDTESSVSEMETGDEEEGETMTTISFQYTEQFDDDDGMLMSGNHLTPSETPPT
SATGANSGVGEVQKGGGGEKSRGGEKKMREYQRELAEPVFQGKNTVICAPTGCGKTVVAL
AICEHHLKVKGKGAKVVFMATKVDVFNQQYKLFQDHFQEKDPDIRINGLCGNQGDQLSMK
VVMENNDIIVLTPQILVNAVAGGEITSLSCFSLLILDECHNTTGKHPYNIIMTSYLDAKL
SKEQSGQHLPQIVGLTASVGIGSFKNQSEAENNICQLCASLDSRIISTIHTNTDELQSYV
HTPEKEFFLVEKRHTDPFIRIIRDIMAKIEGLAKTVYNIESLSAIENRDYGSQKYEQWIV
DVQKKCRVLQLKDQEEESRVCRALYNYTEHLRKYNDALIINEDARTKDALDYLSVFIQQV
KNAGHDETEQRLTAYFDGQQGVLRGLSSGGQKENPKLDMLQYILEEQYRQNDETKSVLFV
RTRALADALKSWIEESDSLKFLKPGVLIGRGHKSSQLTGTRMTLNSKKGVLDSFKSFDNQ
SKILIATSVADEGIDIPQCNLVLMYEYVGNVVKMVQVRGRGRAQGSKCILVSDKKDRIDK
EKHNMEKEKIVEKAIRKLQDTPTEMLRKMEVFQRGDKVCRDMVKMVPERRLTEGSYQLLC
SKCKKHSCYTDDIRVLQDSHHIVLDPTLFSRARTEPHPKPKGFMGLVKTKKLFCHCGLDW
GIVASYLSIQNLPVLKIESFVVKNCVTEQQRYYRKWRDVTFSMKTFELTDIADSWNPLLE
DQ
NT seq 2889 nt   +upstreamnt  +downstreamnt
atgtatgagtctgagaagcgcaatctactgaggtgtagtgaatacctggttcatattttg
cgaccgtcttacgtcaaaggcttcatgacaacttacctgcaaccagaggttgcagagagg
atcctatcagaggagagtaagtctgtgacgtcagcagcccaggtgtttctagaccaggtg
tgtctcctggacgaactgggatggtaccaggccctgctagacgccctggacgcagaagac
tataagggtctgtgtgaggccctgaagaagtgggactttcagatcctggagagcaccaag
atacacagagtgcttctggaaaggatagaacccagcttcaccaaaatgatcaaacccaga
gacctgctgctacacctgggagattgtctcagaaagagagagtatgaagagatacaggca
atagagaaccagaaggggcctatagcggcagcagagaggctgactgactgtctgaagaga
agtgataaacaaaactggttcaaactgctgaagtcggctctgttgtcctgtgacctgact
gacgccctgcagctactggaacctgacacagagtcatcggtgtcagagatggaaacgggt
gatgaggaggagggtgaaaccatgacgactatctccttccagtacaccgagcagtttgac
gacgatgatgggatgctgatgagcggcaatcacttgacaccctcggaaaccccgcccacc
tctgctacaggagccaatagtggtgttggtgaggtccagaaaggaggaggaggagagaag
agtagaggaggagagaagaaaatgagagagtatcagagagagctggctgaaccagtgttt
cagggcaagaacacggtcatctgtgcaccaaccggctgtgggaagacggtggttgccctg
gcgatctgtgagcaccacctgaaggtcaagggtaagggggcaaaggtcgtcttcatggca
accaaggtggacgtcttcaaccagcagtataaactgttccaggatcatttccaagagaaa
gaccctgatatcaggatcaacggcctttgcggtaaccagggcgaccagctgtcgatgaag
gtggtcatggagaacaatgacatcatcgtcttaacccctcagatcctggtgaatgccgtg
gccggaggggagatcacctctctctcctgcttctctctgttgattctagatgagtgtcac
aacacaacagggaaacacccctataacatcatcatgacgtcgtacctggatgccaagctc
agcaaggagcagagcggacaacacctgccccagattgtgggtctgacggcctcagtgggg
attggctcgttcaagaaccaatcagaggctgagaacaacatctgccagctgtgtgccagt
ctggacagccgcatcatctccaccatacacacaaacactgatgagctacagtcctacgta
cacacacctgagaaagagttcttcctggtcgagaagagacacacagaccctttcatcagg
atcattcgtgacatcatggctaagatagaaggactggccaagaccgtctacaatatagag
tccttgtcagccatagagaatcgtgactacggcagtcagaagtatgaacagtggatcgtt
gatgttcagaagaaatgcagagttctccagctgaaagaccaggaggaggagagtagagtc
tgtagggccctgtacaactatactgagcacctgaggaagtataatgatgcattgatcatc
aacgaggatgccaggactaaggacgcgttagactacctgtcagttttcatacagcaggtg
aagaacgcaggacatgacgagacggagcaacgcctcaccgcttacttcgacggtcagcag
ggtgtactgcggggtttgtccagcggggggcagaaggagaatcctaaattggacatgtta
cagtacatcctagaggaacagtatcgacagaatgatgagaccaagtctgtactgttcgtt
aggacacgggcccttgcagacgccttgaagagctggatagaggagtctgactctctgaag
ttcctgaaaccaggagtactgatcgggagaggacacaagtccagccagctgaccggcaca
cgcatgacgctgaactctaagaaaggtgtgctggattcctttaagagttttgacaatcaa
agcaagatcctgatcgctacttcggtggccgacgagggcatcgatatcccacaatgcaac
ctggtattgatgtacgaatacgttggcaatgtggtcaagatggtccaagtcagaggtcgc
ggcagggcccagggcagcaagtgtatcttggtgtctgataaaaaggaccggattgataaa
gagaaacataacatggagaaggagaagattgtagagaaagccatcagaaagctacaggac
acacctactgagatgctccgcaagatggaggtgttccagcgtggggacaaggtgtgtcgt
gacatggtgaagatggtaccagagagacgcctgactgaagggagctaccagctcctctgc
tccaagtgtaaaaaacacagctgttacacagacgacatcagagtactgcaggattctcac
cacatcgtgttggaccccactctgttctctcgagctcggacagaacctcaccctaaaccc
aaaggtttcatggggctggtgaagaccaagaagctattctgtcactgtggactggactgg
gggatagtggcctcatacctgagcatacagaacctgcccgtgttaaagatagagagcttt
gtggtgaagaactgtgttaccgagcaacagaggtactacaggaagtggagagacgtgacc
ttttccatgaagacctttgaactgacagacatagcggatagctggaatccattgcttgaa
gaccagtag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (26)   
   KEGG ORTHOLOGY (1)   
   RefGene (22)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (4)   
   RefSeq(nuc) (2)   
   GenBank (1)   
   EMBL (1)   
Protein domain (11)   
   Pfam (11)   
All databases (51)   

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