KEGG   Salmo salar (Atlantic salmon): 106568813
Entry
106568813         CDS       T04363                                 
Name
(RefSeq) collagen alpha-1(XI) chain-like
  KO
K19721  collagen type V/XI/XXIV/XXVII, alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09140 Cellular Processes
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106568813
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106568813
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106568813
SSDB
Motif
Pfam: Collagen COLFI Laminin_G_2 Laminin_G_3 Laminin_G_1
Other DBs
NCBI-GeneID: 106568813
NCBI-ProteinID: XP_013994958
UniProt: A0A1S3LVE9
Position
ssa01:139967288..140104174
AA seq 2028 aa
MDTHIRWKVKRRIKDSQITLAILLLFVTSQASSVEPADLLKILDFPSLPEGVTKTTGFCA
HRKSTKGADVAYRVSKEAQLSAPTKQLYPADVFPEDFSILATVKPKKGSQSFLLSVYNEQ
GIQQLGVEVGRSPVFLYEDHMGKPSPEDYPLFRGLNLADGKWHRVAISVHKQSITIILDC
KKKTTQKLSRSPHPIIDTKGIVVFGTRILDEEVFEGDIQQLLIVADHRAAYDYCEHYSPD
CEVPVPEQPQAQDPNTDEYNTEEDSYYYEYPYYEDMDGKPSESTSETETDEQAGPATEDV
KVSVPESGRVVTSVKEVVSSVKDTTSQGVEGKVLTAISAGSASAGAAGAGATGEEAYGEE
TSPYDGYDTDSYGNYESYYDESTATPDGTRRVTISSSSTGTGAGVELDLGLGSKFDLGTG
AEFEKVITSSGGVTITRNKTSAGTGYDDNYGEGYDLSYGEGEGEEYSIGGGGHDSRTSSS
SSTVEIGTGGGGGGSVSVGGGSVSVGGGSVSVGGGSVSVGGGSVSVGGSASAGGGTARAG
AGAGDSVATGAGGQGVAIEGDYTDLEGDRFKEESISEYGDADYGYGDLDYGGQEEKVLPA
ETDEYYGQVDGSRGEKGQKGEPAIIEPGMLVEGPPGPEGPTGLPGPPGSSGPPGSHGDAG
ERGPNGRAGLPGADGLPGPPGTVLMLPFRFSSGGDSGQKGPQVSAQEAQMQAIMQQARLA
MRGPTGPMGLTGRSGPLGSPGVAGLKGESGESGPQGPRGPLGSHGPSGKPGRRGRAGSDG
ARGMPGQTGTKGDRGFDGLAGLPGEKGHRGESGPHGPPGPTGEDGERGDDGEIGPRGLPG
DPGPRGLLGPKGPQGPPGSPGVTGMDGHPGPKGNIGPQGEPGPNGQQGNPGAQGLPGPQG
AIGSPGEKGPTGKSGLPGIPGADGPPGHPGKEGPNGEKGHLGPAGPQGPIGYPGPRGVKG
ADGVRGLKGGKGEKGEDGFPGFKGDMGIKGDRGELGPAGPRGEDGPEGPKGRSGLPGDAG
PLGPNGEKGKLGVPGLPGYPGRPGPKGSQGFQGFPGANGEKGTRGLAGKAGPRGQRGPTG
PRGERGPRGPTGKAGPKGTSGSDGPPGPPGERGLPGPQGPTGFPGPKGPPGPAGKDGLPG
HPGQRGETGFQGKTGPPGPPGVVGPQGPTGETGPMGERGHPGPPGPPGEQGLPGSAGKEG
AKGDPGPAGPAGKDGPPGLRGFPGERGLPGPVGAHGLKGNEGPNGPPGPAGSPGERGPAG
PAGPTGLPGRPGPQGPPGPAGEKGGPGEKGPQGPAGRDGVQGPVGLPGPAGPLGPPGEDG
DKGEIGEPGQKGGKGDKGEHGPPGPTGPQGPVGAPGPAGADGEPGPRGQQGLFGQKGDEG
SRGFNGPPGPVGLQGLPGPAGEKGETGDVGQMGPPGPPGPRGPSGPPGADGPQGPPGGIG
NPGSVGEKGDSGENGEPGLQGELGGPGPRGERGEKGESGPAGSAGPPGPKGPPGDDGPKG
SPGPSGFPGDPGPPGEIGQAGLDGPPGDKGDDGEAGQPGSPGPTGESGPSGPPGKRGPHG
TTGPEGRQGEKGAKGESGLEGPQGKTGPVGPQGAPGKQGSEGLRGIPGPVGEQGLPGSSG
PDGPPGPMGPPGLPGLKGDSGIKGEKGHPGLIGLIGPPGEQGEKGDRGLPGPQGTSGPKG
DNGIAGPSGPLGPLGPPGLPGPPGPKGAKGSSGQTGPKGETGIPGQPGPPGPPGDVIHPL
PMQSSPKRSRRNIDASQMMDDANADANYKDYDDGMEEIFGSLNSLKLEIEQMKHPLGTQG
NPARTCKDLQLCHPDFPDGEYWIDPNQGCSRDSFKVHCNFTAGGESCIYPDKKSEGTRLT
SWVKEIPGSWFSEFKRGKLSKMAKWPKDSPGSWYSRYKRGSLLSYVDAEGNPIGVVQMTF
LRLLSAAARQNLTYNCYQSVAWHNQDGDSYDKAIRFLGSNDEEMSYDNNPYIRAVVDGCA
LKKGYEKTVLEINTPKVEQVPFVDIMFNDFGGATQKFGFEVGPVCFIG
NT seq 6087 nt   +upstreamnt  +downstreamnt
atggatacacatataagatggaaagtaaaacggaggataaaggactcgcaaatcacttta
gcgatacttctactttttgtcacatcacaagccagttcagtggagccagcggacctcttg
aagattttagattttcccagtttacctgaaggcgttactaaaaccacaggtttctgtgcg
cataggaagtcaacaaaaggagccgatgtagcctacagagtatccaaagaagcccagctc
agcgcccccaccaaacagctgtaccctgctgatgtgtttcctgaggacttctccatcctg
gctacagtgaagcctaagaagggctcccagtccttcctgctgtctgtgtataacgagcag
ggtatccagcagcttggggtggaggtgggacgctctcccgtcttcctgtatgaggaccac
atgggtaaacccagcccggaggactaccccctcttcagaggtctcaatctggccgatgga
aagtggcaccgagtggccatcagtgttcacaaacagagcatcaccatcatcctggactgt
aaaaagaagaccacccagaaactgtccaggagcccacaccccatcatcgacaccaaagga
attgtggtcttcggaactagaatacttgatgaagaagtctttgagggagacatccagcag
ctgttgattgtggcggaccaccgtgctgcctatgactactgtgaacactacagccccgac
tgtgaggtccctgtcccagagcagccccaggcccaggaccccaacacagacgaatataac
acagaggaggacagctattactatgagtatccttactatgaggacatggatgggaaacct
tccgagtccacctccgagactgagactgacgaacaagctggacctgccacggaagacgta
aaggtgtccgtgccagagagcggccgtgtggtcacctcagtcaaagaggtggtgtcatca
gtcaaggatacaaccagtcagggagtcgagggcaaagtgttgaccgccatttctgccggc
agcgcctctgctggagccgcaggagccggagccaccggcgaggaggcctatggggaagag
accagcccttacgacggctatgatacggatagttatgggaactacgaatcatactatgac
gagtccacggccacgcccgacggcactcgcagagttaccatcagcagctcgagcacgggg
accggcgcaggggtggagctggacctggggctggggtcaaagtttgacctgggcacggga
gcggagtttgagaaggtcatcaccagtagtggaggagtcaccatcacacgcaacaagacc
tcggctggaacaggctacgatgacaactacggtgagggctatgacctgtcctatggagag
ggagagggagaggagtacagcatcggtggcggtggccacgacagcagaaccagcagcagc
agcagtactgttgaaatcggtactggtggtggtggtggtggatctgtatcagtcgggggc
ggttctgtttccgttgggggcggttccgtttccgttggtggtggttccgtttccgttggg
ggcggttccgtctctgtaggtggatctgccagcgccggaggtgggacggcaagagcagga
gctggagctggggattcggttgctacgggagccgggggccagggtgtggctattgaggga
gactacactgatctggagggtgatcggttcaaagaggagtccatctctgagtatggggac
gcagactatggttatggagacctggactacggtggacaggaggagaaggtgctgccagcc
gagacagacgagtactacggacaggttgatgggtctcggggagagaagggacagaaggga
gaacctgctatcattgagcctggaatgctggtggagggtccgcccggtccggaaggccca
acaggtctccctggacccccaggttcctccggccccccaggcagccacggagacgcagga
gaaaggggtcctaatggtcgtgctggtcttcctggcgctgatggtctgccaggacctcca
gggactgtcttgatgctgcctttccgcttcagttctggaggagactctggacagaaggga
cctcaggtgtctgctcaggaggcccagatgcaagccatcatgcaacaagctaggctggcg
atgcgtggtcctactggccctatgggtttgacaggtagatctggtcctctgggttctcca
ggtgtggctggactgaagggagagtctggagagtccggtcctcagggacctcgtggacca
ttgggttctcatggaccctctgggaagcctggcagaaggggacgtgctggttctgatgga
gccagaggcatgcctggtcagaccggaaccaagggagacagagggtttgatggtttggct
ggacttcctggtgagaagggacacagaggtgaatctggaccccatggacctcccggaccc
acaggagaggatggagagagaggagacgatggagagatcgggccacgggggctgcctggt
gacccaggacctcgtgggttgctgggacctaagggacctcaaggacctcccggatcccct
ggtgtaactggaatggatggccaccctggacccaaaggaaacattggaccacaaggagaa
cctggccccaatggacagcaagggaaccctggtgctcagggacttccaggtcctcaggga
gccatcgggtctccaggagagaaggggcctaccggaaaatcaggactgccaggaattcca
ggagctgatggacccccgggtcaccctggcaaggaaggacccaatggagagaaaggacat
ttgggtcccgcaggcccccaaggcccaatcggttatcccgggccccgaggcgtgaaggga
gccgacggtgtacgaggcctgaaaggaggaaagggtgaaaagggagaagatggattccct
ggcttcaagggagatatgggaatcaagggtgacaggggtgagctgggacctgctggaccc
agaggagaggacggacctgaggggcccaagggtcgctccggtcttcctggagatgctggc
cctcttggacccaacggtgaaaagggcaaactgggtgttccagggttgccaggatatcca
ggaagaccaggaccaaagggatctcagggtttccaaggtttccccggagccaacggagag
aaaggaacaaggggacttgcagggaaagctggcccaagaggacagagaggaccaacggga
cctcgtggagagaggggaccaaggggaccaacaggaaaagctggaccaaagggtacctca
ggaagtgatggccccccaggacctcccggtgagaggggtcttccagggcctcaaggacca
acaggattccctggaccaaagggcccacccggacctgctgggaaagatggtctgcccgga
caccctggacagagaggagagactggtttccaaggcaagactggcccacctggaccccca
ggagtggttggacctcagggccccacaggtgagactggaccaatgggagagcgtggccat
cccggacccccaggcccacccggtgagcagggtcttcctggatctgctggtaaagaggga
gctaagggtgaccccggtcccgctggcccggctggtaaggatggtccccctggtctgaga
gggttcccaggagagagaggtctgcctggcccagtgggggctcacggcctgaaagggaat
gaaggccccaacggcccacctggacctgctggttcccctggtgagcgtggtcctgctggc
ccagccggacccactggtctccctggacgaccaggacctcagggaccccctggacccgct
ggagagaagggtggaccgggtgaaaaaggaccccaaggccctgccggtagagatggtgtc
cagggacctgttggtctgcctggcccagctggacctctcggacccccaggagaggatgga
gacaagggagagattggagagccaggtcagaagggaggtaaaggagacaaaggagagcat
ggtccacctggtcctactggtccccaaggcccggttggagcgcctggtcctgctggagct
gatggagagcccggtcccagaggtcagcagggtctgtttggccagaagggagatgaagga
tccagagggttcaatggaccccctggcccagtgggactgcagggattacctggtccagcc
ggcgagaaaggagaaaccggagacgttggtcagatgggtcctcccggtcctcctgggccc
agaggcccctccggacccccaggagctgacggccctcagggacctcctggtggtattgga
aaccctggatctgttggagagaagggtgactcaggtgaaaacggagagcctggtcttcag
ggagaacttggcggacctggcccaagaggagagcgaggagagaagggagagtccggtcct
gcaggttctgctggaccccccggccctaaaggtccccctggagatgacggtcctaaagga
agtcctggtccaagtggtttccctggtgatcctggtccccctggcgagatcggacaggct
ggtttagacggtcctcctggtgacaagggagacgacggagaggctggtcaacctggttct
cctggacccaccggagagtcaggtccttctggcccaccaggaaagagaggcccccatggt
acaactggacccgagggcaggcaaggagagaagggagccaagggagagtctggtctggag
ggcccacagggcaagacaggccccgttggtcctcagggagcacctggcaagcaaggttct
gaaggtctcagaggtatccctggcccagttggggaacaaggtcttccagggtcctcaggc
cccgacggaccccctggacccatgggtcctccaggattaccaggtttgaagggagactct
ggcattaagggagaaaagggccaccctggtctgatcggtctgatcgggcccccaggagag
cagggagagaagggtgacagaggtctgccaggcccccaggggacatcaggacccaaagga
gataatggtattgctggcccctcaggtcctcttggtcccctgggacctccaggattacca
ggtcctcctggtcctaaaggagctaaggggtcatcgggtcaaactggtcccaagggagag
actggtattcctggacaacctgggcctcctggtccacctggggatgtcatccacccactg
cccatgcagtcgagccccaagcggagccgcaggaacatcgatgccagccagatgatggac
gatgccaatgcagatgccaactacaaggactacgacgatggaatggaggagatcttcgga
tcccttaactccctcaagctggagatcgagcagatgaagcacccgctgggaacacagggc
aaccccgcccgcacctgcaaggacctgcagctctgccaccctgacttccccgacggtgaa
tactggatcgaccccaaccagggttgctcgagggactctttcaaggtccactgcaacttc
acagcaggaggagagagctgtatctaccctgataagaagtcagaagggactaggctcacc
tcctgggtaaaggagatccctggctcctggttcagtgaattcaaacgtggtaaactgagc
aaaatggcaaaatggcccaaagactccccaggctcttggtatagtcgctacaagcgaggt
tccctgctctcgtacgtggacgctgagggaaaccccattggtgtggtccagatgaccttc
ctgcgtctgctgagcgcggccgcccgccagaacctcacctacaactgctaccagtcggtg
gcctggcacaaccaggacggggactcgtacgacaaggccatccgcttcctgggctccaac
gatgaggagatgtcctacgataacaacccctacatcagagccgtggtggacggctgtgcg
ttgaaaaagggctatgaaaagacagtactggagatcaacacaccaaaggtggaacaggtg
ccttttgttgacatcatgttcaatgatttcggcggggctacgcagaagtttggattcgaa
gtgggtcctgtctgtttcatcggctaa

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (57)   
   KEGG ORTHOLOGY (1)   
   RefGene (53)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (4)   
   UniProt (1)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (5)   
   Pfam (5)   
All databases (73)   

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