KEGG   Salmo salar (Atlantic salmon): 106573747
Entry
106573747         CDS       T04363                                 
Symbol
edc4
Name
(RefSeq) enhancer of mRNA decapping 4
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    106573747 (edc4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sasa03019]
    106573747 (edc4)
Messenger RNA biogenesis [BR:sasa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     106573747 (edc4)
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     106573747 (edc4)
SSDB
Motif
Pfam: Ge1_WD40 EDC4_C WD40 NBCH_WD40
Other DBs
NCBI-GeneID: 106573747
NCBI-ProteinID: XP_014004556
UniProt: A0A1S3MNZ3
Position
ssa16:complement(30307336..30344295)
AA seq 1408 aa
MASNSNIDIEGATQHLRDILKLDRPGNNVDASPCENQRKTSFNGELNGLMPGAGNRSTMD
ESTGPNSENMNTQECQIICLSGDDGSTCIPITSNNVEIVASRDSSIDSKARGSNKVKIQP
VAKYDWEHKHYYGNLIAVSNSYLAYAIRGANNQAMIRVLSLGSAERTLLKGFTGAVTDLA
FAHLDSTLLGCVDEAGNLVIWQLTCHSSKIQDQVVVHIRRPEDTPLNSNRRLIWCPFILE
DNEENPEDASQTLALLHEDRAEVWDLEILRSNNSTWPVDATDLKDGVITIKGHTDRISEG
ALSPDGTVLATASHDGYVKFWQIYIEGQDQPSPLPGFFHRCLHEWQPHNGNPLSCLLFCD
NHKKQDPDVPFWRFLITGADQNQELKMWCTVSWTCLQTIRFSPDPFNSSVLPSLKASLDL
SAECLILSDVQRKVLYVMELLQDQEKGHASFTAVSEFLLTHPVLSFGVQDVSRSRLRHTE
VLPQDEESESMTAEGNQGPMESRAGIQIKLYCVHTKSLQDVQIWFQPNLGSGSSLFLPHS
DSNDGFGFSDHLTDMSMEGLSSDKESGCGSQNDLRKIPTLPAPADFMSPTGATTMPKLMT
PDAFMTPSASVPASPGSSASSLKMVTAMTSNSDSGARGGEELTQNPKMSVESSSSLTLSA
STSSPRASSLLISGLGDNMPGLPSPNPPLSLDPQVIEPMLIQHASPTLARSPDVISSAST
AMSQDIPEIASETLQRSLGGVSGAESRDPLPALHTDSMASAASALHHLSPRNRNNSDHSH
LTLELGAGAVEAEQRLSNTPSLLENALSQENAAAAAAASCSDNTSHPWPAAPDITRETRN
SLRDNGLGDCSREEMKDRHMSSPYHRRTYHLTQNDSQDASAEQSDHDDEVASLASSSGNC
GARSSQRLPVKEWKSSPRGSPKLKRKSKKDDGDASHASQSRQPEHHNHQHQMNPEVQEEL
LMLLRNQQRELADLRQSQLELLQRVTGHMDAVQSSVIAHVEHVMVSQQEHEQRRMERILA
EGQNRNQQLQEHLSQQLAQTLNNTLCNRLDKTLREEMKKTVPPTIIKSLEPVTAQMNNTI
AAKLTAVEAALKENVSKVVKSKNTTDAIGRAAAEAMQGPIQAAYKDAFQSIVLPVFERGC
QSMFQQINDSFKQGTHEYIQQLETHMKSRKQREQEGQDPMIGQLQQMIDTFQNSTDQLAT
TVTASVRSEVQHQLNMTVGNLQESILTQVQRIVKGEVSMAMKEQQAAVTSSIMQAMRSAA
GTPVPTPHLDYQAQQANILQLLQQGQLNQAFQQALSASDLNLVLYVCETIDSQQVFGQHP
CPLIQPVLLSLIQQLSTNLATRSELKISYLEDAVMNLDHGDPVTRDHMSTVLSQVRQKLF
QFLQQDPHSPLSKRARRLVMMLQGLVNH
NT seq 4227 nt   +upstreamnt  +downstreamnt
atggcttcaaattcaaacatagatatagagggtgcaacccagcatcttcgtgacatatta
aagttggatagacccgggaacaacgtcgacgcatctccatgtgagaaccaaagaaaaaca
tctttcaatggcgaattgaatggacttatgccgggagctggcaacaggtcaaccatggat
gaatccacaggccctaattcagagaacatgaacacccaagagtgccagataatctgcctc
tctggggatgatggctccacttgcattcccatcacatccaacaatgttgaaattgtggcc
agtcgagactcaagcattgacagcaaggcccgtggcagcaacaaggtaaaaatccagcct
gtcgccaagtacgactgggagcacaagcattactacggcaacctgattgcagtttctaac
tcatacctggcgtatgcaatccgaggagcaaacaaccaggccatgatccgtgtgttgagc
ctgggctccgcggagcgcaccctgctgaagggcttcactggtgcagtcacagacctggcc
ttcgcccatctggattccaccctgctgggatgtgttgatgaagctggcaacctggtcatc
tggcagctcacctgccacagcagcaagatccaggatcaagtggttgtccacatccggagg
cctgaagacacacctctaaactccaataggaggttgatctggtgtcccttcatcctagag
gacaatgaagagaaccctgaggatgccagccagaccctggccctgctgcatgaagacagg
gctgaggtgtgggatctggagatcctccgcagcaacaatagcacctggccagtagatgcc
actgacctgaaggacggagttataaccataaaaggacatacagatcgtataagtgaaggt
gccctgtctccagatggcacagtcttggccacagccagtcatgatggttatgtaaagttc
tggcaaatctacattgaaggacaggaccagccaagtcctctccccggcttctttcacaga
tgtctgcatgagtggcagccccacaatgggaaccccctctcctgcctgctgttctgtgac
aaccacaagaaacaggacccagatgttccattctggcgctttctgattactggagctgat
cagaatcaggagctgaagatgtggtgcacagtgtcatggacctgcctgcagaccatcagg
ttttctccagacccgttcaactcctcagtcctgcccagtctaaaggccagcctggacctc
tctgcagaatgcctcatcctcagcgacgtacagagaaaggtgttgtatgtgatggagttg
ttgcaggaccaggagaagggccatgccagcttcacagccgtgtccgagttcctgcttaca
caccctgtactcagctttggtgttcaggacgtcagccgcagccgcctgcgccacacagag
gtcctcccccaagatgaggagagcgagagtatgactgcagagggcaaccagggcccaatg
gaatccagagctgggatccaaataaagctatactgtgtccacacaaagtcccttcaagat
gtgcagatctggttccagccaaaccttgggtctggctcgtccttatttctgcctcactca
gactcaaacgatggctttggtttttcggatcacttgacagacatgagcatggaaggtttg
agctctgacaaggagtccggatgtggctcccaaaatgatctccggaagattcccaccctt
cctgctcctgctgacttcatgtcccccactggcgccaccactatgcccaagctcatgacc
cctgacgccttcatgaccccaagtgcttcagtcccagcctccccaggcagcagtgccagc
agcctgaaaatggtgacagccatgaccagcaactctgacagtggcgctaggggaggagag
gagctcacccagaaccccaagatgtctgtggagagcagtagcagtctgactctcagtgcg
agcaccagcagccccagagccagctcccttctcatctcaggcctaggagacaacatgccg
gggcttccctctccaaacccgcccctctcgttggacccacaggtcattgagcctatgctg
attcagcatgcctctcccaccctggcccgctctccagacgtcatctcatctgcctccacg
gccatgtcccaggacatccctgagatcgcctctgagacgctgcagcgaagcctgggaggt
gtgtctggagctgaatcccgagaccctctcccagccctccacacagacagcatggcttct
gcagcctcagcccttcaccacctctctccacggaaccggaacaactctgaccacagccac
ctgaccctggagctgggtgctggagcagtggaggctgagcagaggctcagcaacactcct
tcactactggagaatgccctgtcacaggagaatgctgctgcagccgccgctgcctcctgc
tccgacaacacaagccacccctggcctgcagctcccgacatcacacgggaaacgcgcaac
agcctgcgggacaacggcctaggagactgctcaagggaggaaatgaaggaccgacacatg
tcctctccataccacagacgcacctaccacttaacccagaatgacagtcaggacgccagt
gcagaacagagtgaccatgatgacgaggtggccagtctagcgtcgtcctccgggaactgt
ggagccaggtcgtctcaaagactgccagtgaaggagtggaagagctctcccagaggctcc
cctaaactaaagaggaagagtaaaaaagatgacggggatgcgtctcatgcctctcagtcc
aggcagcctgagcatcataatcatcaacatcagatgaaccctgaggtgcaggaagagctg
ctgatgctgctgcgtaaccagcagagggagctagcggatctccgtcagagtcagctagaa
ctgctgcagagagtgacaggccacatggacgcagtgcagagctctgtcatagcccatgtg
gagcacgtcatggtcagccagcaggagcacgaacagaggagaatggagagaatcctagca
gagggacagaaccgtaaccagcaactccaggagcatctctcccagcagctggctcaaact
ctcaacaacaccctgtgtaaccgtctggacaagactctccgagaggagatgaagaaaact
gttcctcccaccattatcaagagtctggaacctgttactgcccagatgaataacaccatc
gctgctaagctgacggctgtggaggcagcactgaaggagaacgttagcaaagtcgtcaag
tcaaagaacaccacagatgcaattggccgggcagctgctgaggcaatgcaggggcctatc
caggctgcctacaaggatgcgttccagagcattgtgctgcctgtgtttgagaggggctgc
cagtctatgttccagcagatcaatgacagcttcaagcagggaacccatgagtatatccag
caactggagacccatatgaagagcaggaagcagcgtgagcaggagggccaggaccctatg
attggccagctgcagcagatgattgacacgttccagaattctacggatcagctggccacc
actgtcacagcaagtgtccgctcggaggtccagcaccagctcaacatgacggtgggaaac
ctgcaagaatcgatcctgacccaggtgcagcgcatagtgaagggtgaggtgagcatggcc
atgaaggagcagcaggcagctgtgacctccagcatcatgcaggccatgcgctctgctgca
ggcacgcccgtccctaccccacacctagactaccaggcccagcaggccaacatactgcag
ctgctgcagcagggacagctcaaccaggccttccaacaggccctgtcagcttctgaccta
aacctggttctgtatgtgtgcgagaccatcgactcccagcaggtgtttggccagcatccc
tgccccctgatccagccagtgctgctgtccctcatacagcagctatccactaacctggcc
acacgctctgagctcaagatcagttacttggaggatgctgtgatgaacctggaccatggt
gatccggtgacgagagaccacatgagtactgtgctctcccaggtccgacagaaactgttc
cagttcctgcagcaggacccacacagtcctcttagcaagagagcccggcgcctggtgatg
atgcttcaaggcctggtcaatcactag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (35)   
   KEGG ORTHOLOGY (1)   
   RefGene (31)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (1)   
   RefSeq(pep) (2)   
DNA sequence (2)   
   RefSeq(nuc) (2)   
Protein domain (4)   
   Pfam (4)   
All databases (48)   

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