KEGG   Salmo salar (Atlantic salmon): 106581667
Entry
106581667         CDS       T04363                                 
Name
(RefSeq) collagen alpha-3(VI) chain-like
  KO
K06238  collagen type VI alpha
Organism
sasa  Salmo salar (Atlantic salmon)
Pathway
sasa04510  Focal adhesion
sasa04512  ECM-receptor interaction
sasa04820  Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:sasa00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    106581667
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    106581667
  09142 Cell motility
   04820 Cytoskeleton in muscle cells
    106581667
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:sasa04147]
    106581667
   00536 Glycosaminoglycan binding proteins [BR:sasa00536]
    106581667
Exosome [BR:sasa04147]
 Exosomal proteins
  Exosomal proteins of other body fluids (saliva and urine)
   106581667
Glycosaminoglycan binding proteins [BR:sasa00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   106581667
 Hyaluronan
  Extracellular matrix or blood plasma proteins
   106581667
SSDB
Motif
Pfam: VWA VWA_2 DUF2398
Other DBs
NCBI-GeneID: 106581667
NCBI-ProteinID: XP_014019348
UniProt: A0A1S3NVA6
Position
ssa21:6162387..6170570
AA seq 1548 aa
MRHKGGRSLNTGAALQFVRQYIFTASSGSRRLEGVPQVLILLTSKKSRDDVKGPAVALKD
LEIVSIGVGVGDANFRELEMISFQPGFTFQVAEFSELPSIHPQLVATLKRLSKDTEEAVA
AVTHGIPDLVVELDAAQRDIVFLLDGSDDTRSGFPAMCGFVQRVVKNLNVGEIKDRVSVV
QYSRNPEAHFLLNTYPEKQSVLGSIRSLQHKGGRPLNTGAALQYVKDNVFTASSGSRSQE
GVPQILILLTGGKSQDDVGGAAAALKQDRIVPFSIGTRNSDILELQMIAHIPSYALSVSR
FDDLESIQQQLLSFVKRVPRQPRVYQPTVVDNTESKQRDVVFLLDGSDETLNGFEAMRDF
VQRVVEKLTVQETRDRVSVVQYSKEPEAHFYLNTYTTKQDIVDAVRHLRHKGGITLNTGA
ALQYVRDNIFTASSGSRRQEGIPQILVLLSGGRSNDDVRNAVTNLKAIDVMAIVVGMRNA
DTLELQTISGQPSYAFSAPNYNDLPNIQQQVFSAVQRVAMTTPNLPTTLIDATTDDRRDI
VFLLDGSDDSRRIFPDIQDFMQRVVEKLNVDGNKDHVSVVQYSDTAEVHFNLGMHSTKYY
VLDAVRGLRHKGGSPRNTGAALQYVRDNVFTASSGSRSLQGVPQILILLSGGRSRDDIRT
PVTKLKEMGVISIGIGTGDADTLELQTISHEPNYALSITDFEDPRIQQELLSLLTEASHQ
PEPAAPTMHFESDKKDVVFLIDGSDNSKTGFEGIRRFAEKVVEILNVEENGDRVALVQYS
GNATPNFYLNSYSSKNDVLNSIRSMRHKVGRPLNTGTALQFVRDTVFTASAGGRRAEGVP
QYLFVFSGGRSSDNIMGPAQSLRGDGVRTFSIGTRNADTLELQMISFKPGDSFSVANFNN
LDSIHSSVTAVINGVQETPEMSTVIDNSTLLTSDIQRVDGVDVVFLLDGSDEMQKGVQSI
CDFLGQFVEHLDIGPDKAQVAVIQYSNKPTTHFLLNTYSSKIDIMAEVRNINLEGGRSRN
TGEALDYVKNNVFNTSSGSRRHEGIPQILILLSGGKSQDDVLVPSESLKAAGIVLLTVAV
KYADAAEMQSIAYSPNHAYLLREFSDLSLVRQQLLSAVVSHKDTVRPGLVQGTSVKRDIV
FLLDGSDDVRSRFTDIREFVAKVVEKFDMDKGKDQVAVLQYSNSAAVNFNLNAYKTRDDV
LTAVRNLRPKGGRPQYTGTALQFVKDNVFTNNAASRRHEGAEQILVLLTGGRSRDSPRGP
SRALKTLGVVTFAIGSRMTDLVEMQSISSLPNYSYSVPDFANLQNIQQSLETNLAQVRPQ
EVTRVVESDGNRRDIVFLLDGSDNTRKGFPAIQEFLHKIIENLNVEQKNDRVAVVQFSNG
AVANFYLNSFLRKKDMLNSVRGLSHKGGRPLNTGAALKFVKENVFTRSSGSRQLDGVTQM
LILLSSGRSRDNVDKPASALKELGVLVFGIGTRSSDSRELQKISYDPSYALSVSEFTDLP
NIQQQLLSAMNTAIIQDTTMTPTLIPTILGKEKVLIISISSFTLAWSS
NT seq 4647 nt   +upstreamnt  +downstreamnt
atgaggcacaagggtggaaggagcctaaacactggggcagctctccagtttgtgagacag
tacatctttactgcctcctctggcagtagacgactggaaggtgtgccccaggtcctgatc
cttttgactagcaagaaatccagagatgatgttaagggccctgctgtagctcttaaagat
ctggaaattgtgtcaataggggtcggagttggggacgccaatttccgtgagttggaaatg
atttccttccaacctggtttcacattccaggtcgctgagttctctgagttgccctcaatc
catccacagcttgttgctacgcttaaaagactgtcaaaagacacagaagaagctgtggct
gctgtgactcatggaattcctgatttagtagttgaattagatgctgcacagagagacata
gtgttcctattggatgggtctgatgatactaggagtggatttccagccatgtgtggattt
gttcaaagagtggtgaagaacctcaatgttggagagatcaaagatcgagtttctgtggtt
cagtacagcagaaatccagaggcccatttcttgctgaacacatatccagaaaaacaaagt
gttctaggttctattcgaagcctacagcacaaagggggtagacccctcaacaccggggct
gccctccagtacgtaaaggacaatgtctttactgcctcctcaggaagcagaagccaagaa
ggtgtccctcagatactgatactgctaactggtggcaaatctcaagatgatgttggaggt
gctgctgctgctttgaaacaggacagaattgtaccattcagtattggtacgaggaattca
gacattctagagctccaaatgatagcacatattccctcctatgccctttctgtctctcgg
tttgatgaccttgaaagcattcaacagcagcttttgtcatttgtaaaaagggtccctcgt
cagccaagagtgtatcaaccaactgtagtagataacactgaatccaaacaacgtgatgtt
gtatttttactggatggctctgatgaaactctaaatggatttgaggcaatgcgtgacttt
gttcaaagagtagtggagaaactcactgtgcaggagacaagagatcgagtctctgtggtg
cagtatagcaaagaaccagaggcccacttctatctgaacacttacacaacaaaacaagac
attgttgacgctgttagacacctgaggcacaaaggagggatcaccctcaacactggggca
gctctccagtatgtcagggataacatctttactgcctcctccggaagtagacgccaagag
ggcatccctcagattctggttttattgagtgggggaaggtccaatgatgatgtcagaaat
gcagtgacaaacttgaaagcaattgatgtgatggcaatagtggtgggaatgaggaatgct
gatacacttgagcttcaaactatttcaggtcaacccagctatgctttctcagctccaaat
tacaatgatctcccaaacattcaacagcaagtgttctctgctgttcagagagttgcaatg
actactcctaacttgccaacaacactaatagatgcaacaactgacgacaggagggacatt
gtatttttacttgatggttctgatgattcccgaagaatattcccagatattcaagacttt
atgcagagagtagtggagaaactcaatgtagatgggaacaaagatcatgtgtctgtggtt
caatacagtgacacagcagaggttcatttcaacttgggtatgcattcaacaaaatattat
gttcttgatgctgttagaggtctgaggcacaaaggaggaagtcctcgaaatactggagca
gctctccagtatgtgagggataatgtctttactgcctccagtggaagtagaagcctgcaa
ggtgttccacagatactaatactgctgagtggtggaagatctagagatgatatcagaacc
cctgtcacaaagctcaaagaaatgggagtcatttcaatcggtattggcacaggagatgca
gacacacttgaactgcaaacaatatctcatgaacccaattatgccctgtccattactgat
tttgaagaccccagaattcagcaagaattgttgtcattgttaacagaagcatcccatcaa
ccagagccagctgctcctaccatgcattttgaatctgacaaaaaggatgttgtatttctt
attgatggatctgacaactctaaaactggttttgaggggattcgtcgctttgcagagaaa
gtagtggagattcttaatgtggaggaaaatggcgaccgggtggcccttgttcagtacagt
gggaatgccacacccaatttctatctgaattcatactcttctaaaaatgatgtgcttaat
tcaataagatccatgaggcacaaagttggaagacctctcaacactggcacagccctgcag
tttgtgagagacactgtatttactgcttcagctggaggaagacgtgctgagggtgtgcct
caatacctatttgtcttcagtggtgggagatctagtgataatataatgggaccagcacag
tcattgagaggggatggagtaagaacatttagcattggaacaaggaatgctgatacgttg
gagttacaaatgatatcttttaaaccaggagactctttttctgttgccaattttaataac
cttgacagcatacactcttcagtgacagctgtaataaatggtgttcaggaaacacctgaa
atgtcaactgtcattgacaattccactttgttgacatcagatatccagagggtggatggg
gttgatgttgtatttctacttgatggatctgatgagatgcaaaaaggtgtccaatcaatc
tgtgattttcttggccaatttgttgaacatcttgacatcgggccagacaaagcacaagtt
gctgtgatccagtacagtaacaaacctaccactcatttcctattgaacacttactcatcg
aagattgatatcatggcagaagtacgcaatatcaatcttgaaggaggaaggtcccgcaac
actggggaagctcttgattatgttaaaaacaatgtctttaatacctcctcaggaagtaga
cgccatgagggcatccctcagatactgatactgctaagtgggggaaaatcacaagatgat
gttctggttccatctgagagtctgaaggcggctggaattgtgcttttgactgttgcggtc
aaatacgcagatgcagcggagatgcagagcattgcatacagtcccaatcatgcatatttg
ctaagagagttttctgacctttctcttgttagacaacagttgctctcagcagttgtctct
cataaagacacagtaagaccgggcttagttcaaggcaccagtgtgaaaagagacattgtt
ttcctccttgatggatctgatgatgtaaggagtagattcacagatatacgagagtttgtt
gcgaaagtggtggaaaagtttgatatggacaagggaaaagatcaagttgctgttctgcag
tacagcaacagtgcagcagtgaactttaacctgaatgcgtacaagacaagagatgatgtg
cttacagcagtcagaaatctgaggccaaagggtgggaggcctcaatatactggcacagcc
ctccagtttgtgaaggacaatgtctttactaataatgctgcaagtcgacgtcatgagggt
gctgaacagatcctagtgctactgactggtggcagatctagagattctcctcgaggtcct
tccagggccctcaagactttgggggttgtaacatttgctattggatcaaggatgaccgat
ttggttgaaatgcaatcaatatcatctcttccaaattattcttattcagtccctgatttt
gcaaaccttcaaaacatccagcaaagtttggagacaaatcttgcccaagtaagaccacag
gaggtaactagagttgtggaaagtgatggaaataggagagatatcgtgtttcttctggat
ggatcagataacaccagaaaaggattcccagctattcaggagttcctccacaaaatcatt
gaaaatctcaatgtggaacaaaagaatgacagagtggctgtggtacagtttagtaacggt
gcagtggcaaacttttatttgaattcatttctgagaaagaaagacatgttgaattctgtg
aggggactctcgcacaaagggggaagaccccttaatactggagcagctcttaagtttgtg
aaagaaaatgtattcacaaggtcctctgggagtagacaattggacggtgtgacacaaatg
ctaattctcctcagtagtggacggtcaagagacaatgtagataaaccagcttctgctctc
aaggagcttggtgtcttggtgtttggaattggaacaaggagctctgatagcagagaatta
cagaagatatcctatgaccccagttatgctctctccgtgtctgaatttactgacctcccc
aacatccaacagcagcttctttctgccatgaacactgccattatacaggacacaaccatg
acaccaacactaataccaacaatacttggtaaggaaaaggtcttgatcatttccatttcc
tcttttacattagcatggagtagttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (28)   

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