KEGG   Syntrophus aciditrophicus: SYN_01798
Entry
SYN_01798         CDS       T00346                                 
Name
(GenBank) transcription termination factor rho
  KO
K03628  transcription termination factor Rho
Organism
sat  Syntrophus aciditrophicus
Pathway
sat03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sat00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    SYN_01798
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sat03021]
    SYN_01798
   03019 Messenger RNA biogenesis [BR:sat03019]
    SYN_01798
Transcription machinery [BR:sat03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     SYN_01798
Messenger RNA biogenesis [BR:sat03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     SYN_01798
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N ATPase_2 Spore_III_AA OB_RNB AAA_25 AAA_22 NACHT AAA_14 AAA
Other DBs
NCBI-ProteinID: ABC78563
UniProt: Q2LWV6
Position
complement(2708199..2709446)
AA seq 415 aa
MNIEEIKRQPINELAHLAKDLNVPGAGGMRRQDLIFAILQAQAEKNGMISGSGVLEILPD
GFGFLRAVDYNYLPSPDDIYISPSQIRRFNLRTGDTISGEVRPPKEGEKYFALLKVDTIN
FEASELARDKILFDNLIPVYPHDKLNLESNPENYSTRIMDLFTPIGKGQRGLIVSPPRAG
KTVLLQDIAHSITANHKEVILMVLLIDERPEEVTDMQRSVKGEVVSSTFDEPATRHVQVA
EMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPPSGKVLSGGVDSNALHKPKRFFGA
ARNIENGGSLTIISTALIDTGSRMDEVIFEEFKGTGNMELHLDRRIADRRVFPAFDLIRS
GTRKEELLTPKENLNRIWILRRILQEMNPVDAMEFIIDKMRKTETNQAFLDSMNQ
NT seq 1248 nt   +upstreamnt  +downstreamnt
atgaatattgaagagattaaaagacagcccattaacgaactggctcatctcgcgaaagat
ctgaatgtgccgggcgcggggggaatgagaaggcaggatctgattttcgcgattcttcag
gctcaggcggagaaaaacgggatgatctcggggtcgggcgtactggagattcttcccgat
ggctttgggttcctgagggccgtggattacaattatctgcccagccccgatgatatctac
atttctccttctcaaatccggcggtttaatctccggaccggggacacgatttccggggag
gtcaggccaccgaaggaaggggaaaagtatttcgctctcctcaaagtcgacaccatcaac
tttgaagcttccgaactggcccgcgataaaatcctgttcgataatctcattcctgtttat
ccccatgataaactgaacctggaaagcaatccggaaaactactcgacacggatcatggat
ctcttcacacccatcggcaagggtcagcgggggctgatcgtttcgcctccccgggctggc
aagaccgttcttcttcaggacattgcccacagcatcacggcaaatcataaagaggtcatt
ctcatggtgctgctcatcgatgagcggccggaagaagtgaccgacatgcagcgcagcgtc
aagggagaagtcgtttcctccaccttcgacgagccggcaacccgtcatgtccaggttgcc
gagatggtcatcgagaaggcgaaaaggctggtcgagcacaaacgggatgtggtcatcctc
ctggacagcatcactcggctggccagggcgtacaacaccgttgtacctcccagcggcaag
gtgctgtccggcggtgtggattccaatgcgcttcataaaccgaagcgttttttcggggct
gcccggaacatcgaaaacggcggcagtctgaccattatttccacggcgctgatcgacacc
ggcagccgcatggacgaggtgatcttcgaagaatttaaagggacgggtaacatggaactt
catctggatcgacggatagcggaccggagggttttccccgccttcgatctgatccgttcc
gggacccgcaaagaggagctcctcaccccgaaggagaatctcaacaggatatggattctg
cggagaattctccaggaaatgaatccggtggacgccatggaattcattatcgacaagatg
cgcaagaccgagaccaaccaggcctttctggattccatgaatcagtag

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