KEGG   Staphylococcus aureus subsp. aureus 6850 (MSSA): RSAU_000758
Entry
RSAU_000758       CDS       T02825                                 
Symbol
vacB
Name
(GenBank) ribonuclease R, putative
  KO
K12573  ribonuclease R [EC:3.1.13.1]
Organism
saue  Staphylococcus aureus subsp. aureus 6850 (MSSA)
Pathway
saue03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:saue00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    RSAU_000758 (vacB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:saue03019]
    RSAU_000758 (vacB)
   03016 Transfer RNA biogenesis [BR:saue03016]
    RSAU_000758 (vacB)
Enzymes [BR:saue01000]
 3. Hydrolases
  3.1  Acting on ester bonds
   3.1.13  Exoribonucleases producing 5'-phosphomonoesters
    3.1.13.1  exoribonuclease II
     RSAU_000758 (vacB)
Messenger RNA biogenesis [BR:saue03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     RSAU_000758 (vacB)
Transfer RNA biogenesis [BR:saue03016]
 Prokaryotic type
  tRNA degradation factors
   RSAU_000758 (vacB)
SSDB
Motif
Pfam: RNB CSD2 OB_RNB S1 OB_Dis3 Rho_RNA_bind TBPIP_N RNase_II_C_S1 MarR HemN_C
Other DBs
NCBI-ProteinID: AGU54594
Position
820833..823205
AA seq 790 aa
MNLKQSIEEIINQPEYEPMSVSDFQDALGLSSADSFRDLIKVLVELEQSGLIERSKTDRY
QKKHSSKGQSKLIKGTLSQNKKGFAFLRPEDKDMEDIFIPPTKINRALDGDTVIVEIHQS
KGEHKGKIEGEVKSIEKHSVTQVVGTYSQARHFGFVIPDDKRIMQDIFIPKGQSLGAVDG
HKVLVQITKYADGSDNPEGHISAILGHKNDPGVDILSIIYQHGIEIEFPDEVLQEAEATP
DNIEDSEIKGRHDLRDELTITIDGADAKDLDDAISVKKLANGNTQLTVSIADVSYYVTEG
SALDKEAYDRATSVYLVDRVIPMIPHRLSNGICSLNPNVDRLTLSCRMEIDDSGRVVKHE
IFDSVIHSDYRMTYDAVNQIITEKDPTIREQYNEITPMLDLAQDLSNRLIQMRKRRGEID
FDISEAKVLVNEDGIPTDVLLRQRGEGERLIESFMLIANETVAEHFSKLDVPFIYRVHEQ
PKSDRLRQFFDFITNFGIMIKGTGEDIHPTTLQKVQEEVEGRPEQMVISTMMLRSMQQAH
YDDVNLGHFGLSAEYYTHFTSPIRRYPDLTVHRLIRKYLIEKSMDNKEVKRWEDKLPELA
EHTSKRERRAIEAERDTDELKKAEYMIQHIGDEFEGIVSSVANFGMFIELPNTIEGMVHI
ANMTDDYYRFEERQMALIGERQAKVFRIGDTVKVKVTHVDVDERLIDFQIVGMPLPKNDR
SQRPARGKTIQAKTRGKSLDKSKSDDKGHKKKGKQRKGKNERKNDKSGNSKHKPFYKDKS
VKKKARRKKK
NT seq 2373 nt   +upstreamnt  +downstreamnt
atgaatttaaagcaatcaatagaagagattattaatcaacctgaatatgaacctatgtca
gtttcagattttcaagatgcattaggtttaagcagtgccgactcatttagagatttaatt
aaggtgcttgtggaattagaacaatcaggattaatcgaacgttcgaaaacagatagatac
caaaaaaagcatagttctaaaggtcaatcgaaattaattaaaggaacattaagtcaaaac
aagaaaggttttgctttcctaagacctgaagacaaagatatggaagatatatttattccc
ccaacaaaaattaatcgtgccttggatggagatactgttattgtagaaatccatcaatca
aaaggtgagcataaaggtaaaattgaaggggaagttaagtcaattgagaagcattcagta
actcaagtggttggtacgtatagtcaggctagacattttggttttgtcattccagatgat
aaacgaattatgcaagatattttcattcctaaaggacaaagcttaggtgcagtagatggt
cacaaagtattagttcaaattactaagtatgctgacggttcagataatccagaaggacat
atttctgctattttaggacataaaaatgatcctggcgtagatattttatctattatctat
caacatggcatagaaattgaatttcctgatgaagtgttacaagaagctgaagcaacacca
gacaatatagaagatagtgaaattaaaggacgtcatgatttacgtgatgaattgaccatc
actattgatggcgcggatgccaaagacttagatgacgcaattagtgttaaaaagttagcg
aacggtaatacgcaattaactgtaagtattgctgatgtcagctattatgtaacagaaggt
tctgcattggataaagaggcttatgatagagctacaagtgtatatcttgttgaccgtgta
attccaatgattccacatcgattaagtaatggtatttgttcattaaatcctaatgttgat
cgtttaactttaagctgtcgcatggaaatcgatgatagtggtcgcgttgtaaaacatgaa
atctttgatagtgtgattcattctgattatcgaatgacgtatgatgcggtaaatcagatt
attactgaaaaggatcctacgattcgagagcagtataatgaaattacgcctatgctagat
ttagcacaagatttatcaaatcgtttaattcaaatgagaaaacgccgtggtgaaattgat
tttgatattagcgaagcgaaagtactagttaacgaagatggtatacctacagatgttcta
ttgagacaacgtggtgaaggtgaacgtcttattgagtcatttatgttaattgcaaatgaa
acagttgctgaacattttagtaagttagatgtaccatttatttaccgagtgcatgagcaa
cctaaatcagatcgcttaagacaattctttgattttattacaaactttggcatcatgatt
aagggtactggcgaagatattcatccaacaacacttcaaaaggttcaagaagaagtagaa
ggtcgacctgaacaaatggtcatttcaacaatgatgttacgttcaatgcaacaagcgcat
tatgatgatgtgaacttgggacattttggcttatcagctgaatattatacgcattttaca
tcaccaattagacgttatcctgatttaacagttcatcgtttaatccgtaagtatttaatt
gagaaatcaatggataacaaagaagtgaagcgttgggaagacaaattgcctgagttagct
gaacatacttctaaacgtgaacgtcgtgctattgaggcagaacgtgacactgatgaattg
aaaaaagcagaatatatgattcaacatattggtgatgaatttgaaggtattgtcagctca
gtagctaacttcggtatgttcattgaattgccaaatacgatagaaggtatggttcatatt
gcgaatatgactgacgattattaccgttttgaagagcgtcaaatggcattaattggtgag
cgtcaagctaaagtatttagaattggtgacacagttaaggttaaagtgacgcatgttgat
gtagatgaacgattaattgattttcaaattgtaggtatgcctttaccgaaaaatgatcga
tcacagcgcccagcgcgaggtaagacaattcaagctaaaacgcgtggtaaatcattagat
aaatcgaaatctgatgataaaggtcataagaaaaaaggtaagcaacgtaaaggtaaaaat
gaacgtaaaaatgacaaatcaggaaacagtaaacataagccattttataaagataaaagt
gtgaaaaagaaagcacgtcgtaagaaaaaataa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (10)   
   Pfam (10)   
All databases (20)   

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