KEGG   Shewanella amazonensis: Sama_0238
Entry
Sama_0238         CDS       T00445                                 
Name
(GenBank) DNA-directed RNA polymerase
  KO
K03040  DNA-directed RNA polymerase subunit alpha [EC:2.7.7.6]
Organism
saz  Shewanella amazonensis
Pathway
saz03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:saz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Sama_0238
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:saz03021]
    Sama_0238
   03400 DNA repair and recombination proteins [BR:saz03400]
    Sama_0238
Enzymes [BR:saz01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Sama_0238
Transcription machinery [BR:saz03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Sama_0238
DNA repair and recombination proteins [BR:saz03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Sama_0238
SSDB
Motif
Pfam: RNA_pol_A_bac RNA_pol_A_CTD RNA_pol_L RNA_pol_L_2
Other DBs
NCBI-ProteinID: ABL98449
UniProt: A1S243
Position
264078..265067
AA seq 329 aa
MQGSVTEFLKPRLVDIEQVSPTRAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVE
IDGVLHEYSSKEGVQEDILEILLNLKGLAVILEGKDEAMLTLSKSGAGPVTAADITHDGD
VTIANPDHVICHLTGNHDISMRIRVERGRGYVPASARAQNEDDDRPIGRLLVDASFSPVA
RIAYNVEAARVEQRTDLDKLVIDMTTNGTIDPEEAIRRSATILAEQLDAFVELRDVSVPE
QKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKTPNLGKKSLT
EIKDVLASRGLSLGMRLENWPPASLADDL
NT seq 990 nt   +upstreamnt  +downstreamnt
atgcagggttctgttacagaatttcttaaaccgcgtctcgtggacatcgagcaggttagc
ccaactcgtgccaaagttaccctggaaccgcttgagcgtggtttcggtcacactttaggt
aacgcgttgcgtcgcatccttctgtcgtccatgcctggctgcgcggtcaccgaagttgaa
atcgacggtgtactgcacgaatacagcagcaaggaaggcgttcaggaagacatcctcgag
atcttgttgaacctgaaaggtttggcagtgattcttgagggcaaagacgaggctatgctc
actctgagcaagtccggcgcaggccctgttactgcagcagacatcacccatgatggtgat
gttactatcgccaaccctgatcatgttatctgtcacctgaccggtaatcatgacatcagc
atgcgtatccgcgttgagcgtggtcgtggttatgtgccggcttctgcccgtgcacagaac
gaagacgatgatcgcccaatcggtcgtctgctggttgacgcttctttctcaccggttgcc
cgtattgcctacaatgtagaagcggcccgtgttgagcagcgtactgacctggacaagctg
gtaatcgatatgaccactaatggtacaatcgatccagaagaggctatccgtcgctctgca
actattctggctgaacagctggatgcgtttgtagaactgcgtgatgtgtctgttccagag
cagaaggaagagaagccagagttcgatccaatcctgctgcgtcctgtcgacgatttagag
cttactgtacgttcggccaactgcttgaaggccgaagcgattcattacatcggtgatctg
gttcaacgcacagaagttgagctgctcaagactcctaacctgggtaagaaatctcttacc
gagatcaaggacgtattggcttctcgcggtctgtcgttgggtatgcgtctggaaaactgg
cctccagccagcttggcagacgacctgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   SWISS-PROT (1)   
Protein domain (4)   
   Pfam (4)   
All databases (16)   

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