KEGG   Shewanella amazonensis: Sama_2605
Entry
Sama_2605         CDS       T00445                                 
Name
(GenBank) ribosomal large subunit pseudouridine synthase D
  KO
K06180  23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23]
Organism
saz  Shewanella amazonensis
Brite
KEGG Orthology (KO) [BR:saz00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:saz03009]
    Sama_2605
Enzymes [BR:saz01000]
 5. Isomerases
  5.4  Intramolecular transferases
   5.4.99  Transferring other groups
    5.4.99.23  23S rRNA pseudouridine1911/1915/1917 synthase
     Sama_2605
Ribosome biogenesis [BR:saz03009]
 Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    Sama_2605
SSDB
Motif
Pfam: PseudoU_synth_2 S4 TruB_N
Other DBs
NCBI-ProteinID: ABM00808
UniProt: A1S8V1
Position
complement(3118400..3119374)
AA seq 324 aa
MTQEINLKSEISATQTGLRLDQAIAELFPDYSRTRLKEWILGGNVYVDGVVVTKPREKVL
ESQVIEIEATLEEEVAAEAQEIDLDIVYEDDHILVINKQAGLVVHPGAGNADGTLMNALL
HHCPEIEHVPRAGIIHRLDKDTTGLMVVAKTVEAQTHLVAALQARDITREYEAIVLGTMT
AGGTVDAPIGRHPTKRTHMAVHHSGRPSVTHYRVAEKFRAHTRLRLRLETGRTHQIRVHM
AHIGHVLVGDPVYGGRPKPPKNASPEFFEVLKNFTRQALHAVRLELAHPVTMEIMSFNAP
IPEDMVLLTKALRKDTEANPQDHI
NT seq 975 nt   +upstreamnt  +downstreamnt
atgacccaagagattaatctaaaaagcgagatttcagcaacacaaacggggctgagactg
gatcaagccattgcggagttgtttcccgactattcgcgcacccggctgaaagaatggatc
ctcggcggcaacgtctatgtggatggtgtcgttgtgactaaacccagagaaaaggtactc
gaatctcaagtgattgagattgaggccaccctggaagaagaagttgcggcagaggcccag
gaaatcgatctcgatatcgtctacgaagacgaccatattctggtgatcaataagcaggcc
ggtctggtcgtgcatcccggtgccggtaatgccgatggcactctgatgaacgcacttttg
catcactgccctgaaatagaacatgtgccaagagccggaattatccatcgtctcgataaa
gacaccacagggttgatggtggtggcaaaaactgtagaggcccaaactcatttggtcgct
gcgctgcaggcccgtgatatcacccgtgaatacgaagccatagtgcttggtaccatgacc
gctggcggtactgtggatgcacccattggtcgtcacccgaccaagcgcactcatatggcg
gtacaccacagtggccgtccttcggtgacgcattaccgggtggccgaaaagttccgtgcc
catacccgcttgcgcctccgtctggaaaccggccgtactcaccaaattcgtgtccatatg
gctcacattggtcatgtgctggtgggtgaccctgtatatggtggccgtccaaaaccaccc
aaaaatgccagcccggagttttttgaggttctgaaaaatttcactcgtcaggcactgcat
gccgtcaggctcgagctagcgcacccggtcaccatggaaatcatgtccttcaatgcccca
attcctgaagacatggtgctgttgaccaaggcccttcgtaaagatactgaggccaatcct
caggaccatatctaa

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (3)   
   Pfam (3)   
All databases (12)   

Download RDF
DBGET integrated database retrieval system