KEGG T04690: BVH56

Abyssicoccus albus: BVH56_01580

Entry

BVH56_01580       CDS       T04690

Name

(GenBank) ATP-dependent RNA helicase

K05592

ATP-dependent RNA helicase DeaD [EC:5.6.2.7]

Organism

sbac Abyssicoccus albus

Pathway

sbac03018

RNA degradation

Brite

KEGG Orthology (KO) [BR:sbac00001]
09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BVH56_01580
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbac03019]
    BVH56_01580
   03009 Ribosome biogenesis [BR:sbac03009]
    BVH56_01580
Enzymes [BR:sbac01000]
5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     BVH56_01580
Messenger RNA biogenesis [BR:sbac03019]
Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Helicases
     BVH56_01580
Ribosome biogenesis [BR:sbac03009]
Prokaryotic type
  rRNA helicases
   BVH56_01580

SSDB

Motif

Pfam:

DEAD Helicase_C ResIII AAA_30 Helicase_RecD CMS1 AAA_19 Flavi_DEAD STI1-HOP_DP

Other DBs

NCBI-ProteinID:

AQL55731

Position

274967..276481

AA seq 504 aa
MVNFKSLGLSDQTVKALDELGFTEPTPIQEEAIPYMLEGRDVLGQAQTGTGKTGAFGLPL
VEKVQANQGIQAMVLAPTRELAVQVAEQLKSFGKYHNLRVINIFGGVPIERQIQGLKKKP
EIIVGTPGRVIDHLNRRTLKPEDIHTLILDEADEMMNMGFIDDMRFIMSKLPAHNRQTLL
FSATMPKAIQQLVQQFMNSPEIVKTMNQQQSDPQITEYYTIVKELEKLETFTNFLDVHQP
ELAICFGRTKRRVDELTSALIAKGYRAEGLHGDITQSKRLEVLKKFKNDALDILVATDVA
ARGLDISGVTHVYNFDIPQDTESYTHRIGRTGRAGKEGVAISLVNPIEMDYIRQIEKDKN
RTMQALRPPHADEVMKARKDDTVQRVKDLLNKGDKQQDRHTKTLASELIEEYGDVNVVTA
LLKEMMSQSDDVDVQLTFEKPLSKKAQNKSRGRKRGGNFKGGGKGRRDFKGGNRRKSNDR
PNKLGEGRKPKAGFKGRTFADHKK

NT seq 1515 nt +upstreamnt +downstreamnt
ttggtaaattttaaatcactagggctttctgatcaaactgtgaaagcattagacgagtta
ggttttacagaaccgactccaattcaagaggaagcgattccttacatgttagaaggacgc
gatgttttagggcaagcacagacaggtacggggaaaactggagctttcggactacctctt
gttgagaaagttcaagcaaatcaaggtattcaagcaatggtactggcgccgacaagagaa
cttgcagtacaagttgcagagcaattgaaatcattcggtaaatatcataatttacgtgtc
atcaatatctttggaggcgttccaatcgaacgtcaaattcaaggactaaaaaagaaacct
gaaattatcgttgggacaccaggtcgtgtcattgatcatttaaatcgtcgtacgttaaag
cctgaagatattcatacgttaattctagatgaagcagatgaaatgatgaatatgggcttc
atcgatgatatgcgattcattatgagcaaattacccgcgcataatcgtcagacattgtta
ttctcagcgacaatgccgaaagcaatccaacagttagttcaacaatttatgaactctcct
gagattgtaaagacaatgaatcaacaacagtcagacccacaaataactgagtattataca
atagtaaaggaattagaaaagcttgagacattcacgaacttcttagatgttcatcagcca
gaactcgcaatttgtttcggccgtacgaagcgtcgtgtagatgaattaacaagtgcatta
attgctaaaggctatcgtgcagaaggattacatggggatatcacacaatcgaaacgttta
gaagtgctaaagaaattcaaaaatgatgcattagatattcttgtagctacagacgttgct
gcccgtggtttggatatttcaggtgtaactcatgtttataacttcgatattccgcaagac
acagaatcgtacacacaccgtattggacgtacaggtcgtgcgggtaaagaaggtgtcgcg
atttctttagttaatccgattgaaatggactacatccgtcaaattgagaaagacaagaat
cgtacgatgcaagcactacgtccaccacatgctgatgaagtaatgaaagcacgtaaagat
gatacagttcaacgtgtgaaggatttacttaataaaggtgataaacaacaagaccgtcat
acgaagacgcttgcatctgaattaatcgaagaatacggtgatgtaaatgttgtgacagca
ttattgaaagaaatgatgtcacaaagtgatgatgtcgatgtacaacttacattcgaaaaa
ccattatctaaaaaagcgcaaaataaatcacgtggccgtaagcgcggtggaaacttcaaa
ggaggcggcaaaggacgtcgcgactttaaaggtggtaaccgtcgtaaatcaaatgatcgc
ccaaataaattaggtgaagggcgtaaacctaaagctggatttaaaggacgtacgtttgca
gatcataaaaaataa

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   RefGene (4)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (9)   
   Pfam (9)   
All databases (22)   

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