KEGG   Abyssicoccus albus: BVH56_04860
Entry
BVH56_04860       CDS       T04690                                 
Name
(GenBank) Zn-dependent hydrolase
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
sbac  Abyssicoccus albus
Pathway
sbac03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbac00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    BVH56_04860
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbac03019]
    BVH56_04860
Messenger RNA biogenesis [BR:sbac03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     BVH56_04860
SSDB
Motif
Pfam: RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Gly_kinase
Other DBs
NCBI-ProteinID: AQL56291
Position
complement(926076..927800)
AA seq 574 aa
MTTNKEQESQNHAKQSKNKQKDNQNIKIIPLGGVGEIAKNMYIVEVDDEMFMFDAGLMFP
EDEMLGIDAVIPDISYVIQNKHKLKGIFLSHGHDDSIGAIPYIMDKVNAPIYASKLTIAL
VKHALIEHKVERKVKFFTINEDSVMKFDHVHMTFFNTTHSIPDAYGVALHTQYGAIVYTG
EFKMDQTMQGKYSMNVIKMSEVASNGVFALISDSTSAEKQGFNTPESEIGSHILDEFSKS
KARIIVSCYASNFIRIQQVLDAAASTNRKVSFLGKSLESSFSIARKLGYFNIADDLLIPI
HKVEDYPDNEVVVIATGSEGEPIENLQRMAKGQHNILNLKPKDNVFITTTPSSNMEVVLY
QTMNDIVKAGANIISNAAKVHASSHGTSEELRFVINLMKPKYFIPVQGEFKMQIAHAKIA
SETGVVPENIYLLEKGDVLSYDSEQMTVLKKVEASNVLIDGRGVGDVGNIVLRDRRILSE
DGIFIIVVTIDKNKKEIVAGPKIQSRGFVYVRKSEELLQEADEAVIEIVKDKLSENRLDW
SEMKSDIRERLGKMMYDETKRRPMIIPIIQEVKS
NT seq 1725 nt   +upstreamnt  +downstreamnt
ttgactactaataaagaacaagaatcacaaaatcatgcaaaacaatcaaaaaataaacag
aaagacaaccaaaacataaaaatcattcccctcggcggtgtcggtgaaattgcaaagaat
atgtacatcgttgaggttgatgatgaaatgttcatgtttgatgctgggttaatgtttcct
gaagatgaaatgttaggtatcgacgcagtaattcctgatattagctatgtcattcaaaat
aaacataaacttaaaggcatattcttatcacatggacatgatgattcaattggggctatt
ccatatattatggataaagtaaacgctccaatctatgcatctaaattaacaatagcgcta
gttaagcatgctttgattgaacataaagtagaacgaaaagttaaattttttacaattaat
gaagacagtgtgatgaagtttgatcatgttcatatgacattctttaatacaacacatagt
ataccggatgcttatggtgtagctttacacacacaatacggtgcgattgtgtatactggt
gaattcaaaatggatcaaacgatgcaaggaaaatattcgatgaatgtcattaaaatgagc
gaagttgcatcgaatggagtctttgcattaatcagtgattcaacaagtgctgagaagcaa
gggttcaatacaccagaatctgaaatcggatctcatatactcgatgaattcagcaaaagt
aaagcgcgtattatcgtgtcatgttatgcttcaaactttattcggattcaacaagtgctt
gatgctgcggcaagtacaaatcgtaaagtttcatttttaggaaagagtcttgagagctca
tttagtattgctagaaaacttggatactttaatattgcggatgatcttttaataccaatt
cataaagtggaagattatccagataatgaagttgtagtgatcgctactggatctgaaggt
gaaccgattgagaaccttcaacgtatggcaaaaggtcagcataatattttgaatttaaaa
ccaaaggataatgtctttatcacaacaacaccatcatctaatatggaagttgtgttatat
caaacaatgaatgatatcgtcaaagccggtgcaaatattataagtaatgctgcaaaagta
catgcatcgagtcatggaacgagtgaggaattaaggtttgtgattaatttaatgaaacca
aagtactttattccagttcaaggtgaatttaaaatgcaaattgctcacgcaaaaattgca
agtgagactggtgttgttccagaaaatatatatttattagaaaaaggcgacgtcttaagt
tatgattcagagcaaatgaccgtgcttaaaaaagttgaagcaagcaatgtattaattgat
ggtcgtggcgtaggcgatgtcggaaatattgttttacgcgatcgaagaatattaagtgaa
gacggaatttttattattgttgtgacgattgataaaaataaaaaagaaattgttgcagga
cctaaaatccaatctcgtggattcgtatatgtcagaaaatcagaagaattattacaagaa
gcagatgaagcagtaattgaaattgttaaggataaactatctgaaaatcgtcttgattgg
tcagagatgaaatcagatattagagaacgcttaggaaaaatgatgtatgatgaaacgaag
agaagaccaatgattatccctattattcaagaagtgaaatcataa

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (13)   
   KEGG ORTHOLOGY (1)   
   RefGene (10)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (5)   
   Pfam (5)   
All databases (22)   

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