KEGG T01579: SBG

Salmonella bongori NCTC 12419: SBG_2572

Entry

SBG_2572          CDS       T01579

Symbol

ygcA

Name

(GenBank) putative RNA methyltransferase

K03215

23S rRNA (uracil1939-C5)-methyltransferase [EC:2.1.1.190]

Organism

sbg Salmonella bongori NCTC 12419

Brite

KEGG Orthology (KO) [BR:sbg00001]
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:sbg03009]
    SBG_2572 (ygcA)
Enzymes [BR:sbg01000]
2. Transferases
  2.1  Transferring one-carbon groups
   2.1.1  Methyltransferases
    2.1.1.190  23S rRNA (uracil1939-C5)-methyltransferase
     SBG_2572 (ygcA)
Ribosome biogenesis [BR:sbg03009]
Prokaryotic type
  rRNA modification factors
   23S rRNA modification factors
    SBG_2572 (ygcA)

SSDB

Motif

Pfam:

tRNA_U5-meth_tr TRAM Methyltransf_31 Methyltransf_25 PCMT Methyltransf_11 MTS Met_10 RrnaAD Methyltransf_23 Methyltransf_12 Cons_hypoth95 Methyltransf_4 Methyltr_RsmB-F PrmA Methyltransf_15 FtsJ Ubie_methyltran

Other DBs

NCBI-ProteinID:

CCC31624

UniProt:

A0A0K0HDC0

Position

complement(2817947..2819242)

AA seq 431 aa
MAQFYSAKRRVTTRQIITVTVNDLDPFGQGVARHNGKALFIPGLLPEESADVIITEDKKQ
FARARVSSRLNDSPERELPRCPHFGVCGGCQQQHVSVALQQRSKSAALARLMKHEVNDII
AGEPWGYRRRARLSLNCPPDKSLQMGFRQAGSSDIVNVEQCPVLVPQLEALLPRVRACLA
SLQGTRHLGHVELVQAGNGTLMILRHTAPLSASDKEKLERFSHSEGLSLFLAPFSEILET
VIGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAADRVLDLFCGMGNFT
LPLATCAASVVGVEGVPALVEKARENAIRNELHNVTFFHENLEEDVTKQPWAKNGFDKVL
LDPARAGAAGVMRHIIKLKPIRIVYVSCNPATLARDSEVLVNAGYEVTRLAMLDMFPHTG
HLESMVLFERM

NT seq 1296 nt +upstreamnt +downstreamnt
atggcgcaattctactctgcaaaacgacgcgtgacgacgcgtcagatcataaccgttaca
gtcaatgacctggatccatttggtcagggggttgcccgtcataatggaaaggctctgttt
attcctggtttattgcccgaggaaagcgcagacgtcattatcacagaagataaaaagcaa
ttcgcccgtgcgcgggtttcgagccgtttgaatgatagcccggaacgcgagctgccgcgt
tgtccacattttggtgtctgcggcggttgccagcaacagcatgtcagcgttgctttgcaa
caacgtagcaaaagtgcggcgttggcgcgtttgatgaaacatgaggtgaatgacattatc
gctggcgaaccctggggctatcggcgacgggcgcgattaagcctgaactgtccgccggat
aaatcactgcagatgggatttcgccaggcgggttccagcgatattgtcaatgtagaacag
tgccctgttctggtgccccagcttgaagcattgttaccccgagtcagggcgtgcctggcg
agtttacaggggaccagacaccttgggcatgttgagctggtacaggcgggcaacggtacg
ctgatgattctgcgccataccgcacccttaagcgcgtcggataaagaaaaactggaacgc
ttttcgcattctgagggattgtctctgtttctggcgccgtttagcgagatactggaaacg
gtaatcggtgaagcgccctggtatgattcccacggtttacgtttagcgtttagtccgcgc
gactttattcaggttaatgaagcggtaaaccagcagatggttgcccgcgcgctggaatgg
cttgatgtgcgtgccgctgaccgtgttctggacctgttttgcgggatggggaattttacg
ctgccgctggcgacttgtgcggcaagcgttgtgggggttgagggggttccggcgctggta
gaaaaagcacgggaaaacgccatccgcaatgaattacataatgtgacattttttcatgaa
aaccttgaagaagatgtgacgaagcagccgtgggcgaaaaatggctttgacaaagtctta
ctcgatcctgcgcgtgcaggggctgccggagtgatgcgacatattataaaattaaaacct
attcgcattgtttatgtatcctgtaatccagcgacgctggcgcgcgatagcgaagtgctg
gtaaatgcgggatacgaggttacgcgtttagcgatgctcgacatgttcccgcatacagga
catctggagtcaatggttctgttcgagcgcatgtaa

All links

Ontology (3)   
   KEGG BRITE (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (18)   
   Pfam (18)   
All databases (27)   

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