KEGG   Sorghum bicolor (sorghum): 8056440
Entry
8056440           CDS       T01086                                 
Name
(RefSeq) exosome complex component CSL4
  KO
K07573  exosome complex component CSL4
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8056440
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8056440
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     8056440
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Core exosome
     8056440
SSDB
Motif
Pfam: EXOSC1 ECR1_N RRP4_S1 CHASE5
Other DBs
NCBI-GeneID: 8056440
NCBI-ProteinID: XP_021314367
Position
4:complement(67377571..67379668)
AA seq 200 aa
MAATAMDHDGGGGDVVTPGELLGNSLTLAAGRGAYADGRSVRASVTGRRRIVPPAPGSDD
QRSTVEVVGHKAHGAVPQPGSVVIARVTKVMARMASADIMCVDSKAIKEKFTGMIRQQDV
RATEIDKVDMYQSYRPGDIVKAMVLSLGDARAYYLSTAKNELGVVSAQSIAGGTLVPISW
TEMQCDLTGQIEQRKVAKVE
NT seq 603 nt   +upstreamnt  +downstreamnt
atggcggccaccgcgatggaccacgacggcggtgggggcgacgtggtcacaccaggggag
ctcctcggcaactccttaactctcgcggccggacgcggcgcctacgccgacggccgctcc
gtgcgcgcgtcggtcaccgggcgccgccgcatcgtgccgcccgcacctggctccgacgac
cagagatccacggtggaggtggtggggcacaaggcccatggagctgtgccgcagccggga
agtgtcgtcatcgcccgagtaacaaaggttatggctagaatggcctctgcagatatcatg
tgtgttgactcaaaggctatcaaagaaaagttcactggcatgataaggcagcaagatgtt
cgtgcaactgaaattgacaaggttgatatgtaccagtcatatcggcctggggacattgtt
aaagctatggttctttcccttggtgatgcaagggcatattacctttccacggcgaagaat
gaacttggagtcgtttcagcacaaagtatagctggtggcacattggtcccaatcagttgg
actgagatgcaatgtgacttgactggtcaaattgagcaaaggaaagttgcgaaggtggaa
tag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (14)   

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