KEGG   Sorghum bicolor (sorghum): 8068420
Entry
8068420           CDS       T01086                                 
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
  KO
K12581  CCR4-NOT transcription complex subunit 7/8
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8068420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8068420
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     8068420
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     8068420
SSDB
Motif
Pfam: CAF1
Other DBs
NCBI-GeneID: 8068420
NCBI-ProteinID: XP_002436439
Position
10:2341703..2343083
AA seq 404 aa
MSSKSINCIHWDSECSSEYGDLVSEFESNWTAVWSASTIRGRHARILRRHHKTRARPRLT
PHVPRFKTQTRQDAVTLTGGFEATAMYSHDGGPVLIHPLQPPPPPPPPLCSFVHIVPQYT
MVEYPPQPAPLVFTPGGGGGAFLEAATKDVRPEVRDVWAGNFNDELSNLTAVLPHYPWVC
VDTEFPGAVHDSDTPRYLRGPRESYALVKKNVDDLKLLQVGIALSGPAGRFPVAWQFNLR
GFDPARHPYAPASLALLRAQGMHFATMNEFGIDPDAFAVGFHRSGLACGQLTWTAFSGSY
DFAYLAKVLTGGQPLPATLDGFLALVRQLFGPNVLDVKHLARCCAMRGGLEQVAAALGVE
RAAGHAHCAGSDSLLTTDVLLAMLNSFFMNVDVLVHAGTIVDLA
NT seq 1215 nt   +upstreamnt  +downstreamnt
atgagtagtaaatcaatcaattgtatacattgggattccgaatgttcatcggagtatggc
gatctggtttcagaattcgagtcgaattggactgcggtctggtccgcttcgacaatccga
ggtcggcacgcccgtatcttgcgccgccaccataaaaccagggcacggccacgattaacg
ccccacgttccaagattcaaaacgcaaactcgccaagacgcggttacccttaccggcggt
tttgaagccacggcgatgtactcccacgacggcggtccggtcctcatccaccctctgcag
ccgccgccgccgccaccgccaccgctgtgtagcttcgtccacatcgttccacagtacacc
atggtggagtacccgccgcagccggcgcccctggtgttcacgcccggcggcggcggcggc
gcgttcttggaggccgccaccaaggatgtgcgccccgaggtgcgcgacgtgtgggccggc
aacttcaacgatgagctctccaacctcacggcggtgctgccgcactacccctgggtgtgc
gtcgacaccgagttccccggcgcggtccacgactcggacacgccgcggtacctccgcggg
ccgcgggagagctacgcgctggtgaagaagaacgtggacgacctcaagctgctccaggtc
gggatcgcgctgtcgggccccgccggacgcttccccgtcgcgtggcagttcaacctccgg
ggcttcgaccccgcgcgccacccgtatgcgccggcgtccctcgccttgctccgcgcgcag
gggatgcacttcgccaccatgaacgagttcggcatcgacccggacgccttcgccgtcggg
ttccaccgcagcggcctcgcctgcgggcagctcacctggaccgcgttctcgggctcctac
gacttcgcgtatctcgccaaggtgctcaccggcggccagccgctgccggccacgctggac
gggttcctcgccctggtccgtcagctgttcggccccaatgtgctcgacgtgaagcacctc
gccaggtgctgcgccatgcgcggggggctggagcaggtggccgccgcgctcggcgtggag
cgcgccgccggccacgcgcactgcgccggctctgacagcctgctaaccaccgacgtactc
ctggcaatgctgaatagcttcttcatgaacgtcgatgtgctcgtgcacgcaggaaccatc
gtagacctagcctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (11)   

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