KEGG   Sorghum bicolor (sorghum): 8073979
Entry
8073979           CDS       T01086                                 
Name
(RefSeq) probable U6 snRNA-associated Sm-like protein LSm4
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03018  RNA degradation
sbi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8073979
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8073979
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8073979
   03041 Spliceosome [BR:sbi03041]
    8073979
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     8073979
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     8073979
Spliceosome [BR:sbi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    8073979
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 8073979
NCBI-ProteinID: XP_002457589
UniProt: A0A921RBZ7 C5XFV4
Position
3:complement(10570749..10575191)
AA seq 145 aa
MLPLSLLKTAQGHPMLVELKNGETYNGHLVNCDTWMNIHLREVICTSKDGDKFWRMPECY
IRGNTIKYLRVPDEVIDKVQEETSKSRSDRKPPGVGRGRGRGDVGTKPGGRGIGRGQDDG
GRGSGGRGRGVGAKGGNKGGGRGRG
NT seq 438 nt   +upstreamnt  +downstreamnt
atgcttcccctctcgctcctcaagaccgcccaggggcaccccatgctcgtggagctgaag
aatggtgagacgtacaacgggcatctggtcaactgcgacacgtggatgaacatccacctt
agggaggttatttgcacctcaaaggatggtgacaagttttggaggatgccagaatgttac
atccgcgggaacaccattaagtatcttcgagttcctgatgaggtgattgacaaggttcag
gaggaaacttccaagagccgatcagataggaagccaccaggtgttggccgcggaagagga
agaggggacgttggtactaaacctggaggcagaggcattggacgtggccaagatgatgga
ggtagaggcagtggtggtcgtggaaggggtgttggtgccaaaggtggcaacaaaggtggg
ggccgtggccgtggctga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (16)   

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