KEGG   Sorghum bicolor (sorghum): 8081075
Entry
8081075           CDS       T01086                                 
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 24
  KO
K12835  ATP-dependent RNA helicase DDX42 [EC:5.6.2.7]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    8081075
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:sbi03041]
    8081075
Enzymes [BR:sbi01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     8081075
Spliceosome [BR:sbi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    8081075
 Complex B
    8081075
 Complex C
   U2 SnRNP specific factors
    8081075
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SNF2-rel_dom
Other DBs
NCBI-GeneID: 8081075
NCBI-ProteinID: XP_002467976
UniProt: A0A921S4V3 C5WMG3
Position
1:complement(68098417..68103213)
AA seq 766 aa
MSKRPKLEGFSIPRPTSYNFERSQPVQRLYRPTDDPDLDDIAFSDDAPSDAPASTAVEGK
AEDDEEIDPLDAFMAEIQEEIRAPPPPPKPEALRRADSDDDEDDPVESFLRAKKDAGLTL
AADAMRAGYDSDEEVYAAAKAVDAGMMEYDSDDNPIVVDKKKIEPIPALDHSTIEYDAFT
KDFYEEKPSISGMSDQEVADYMKSLAIRVSGFDVPRPIKNFQDCGFPVPLMNAIAKQAYE
KPTTIQCQALPIVLSGRDIIGIAKTGSGKTAAFVLPMIVHIMDQPELEKEEGPIGVICAP
TRELAHQIYLEAKKFAKPYNLRVAAVYGGVSKFDQFKELKAGCEVVIATPGRLIDLLKMK
ALKMFRATYLVLDEADRMFDLGFEPQIRSIVGQIRPDRQTLLFSATMPYKVERLAREILT
DPIRVTVGQVGGANEDIKQVVNVLPSDVEKMPWLLEKLPGMIDDGDVLVFASKKARVDEI
EKELNQRGFRIAALHGDKDQASRMETLQKFKSGTYHVLVATDVAARGLDIKSIKTVVNFD
IAKEMDMHIHRIGRTGRAGDKDGTAYTLITQKEARFAGELVHSLIAAGQDVPNELMDLAM
KDGRFRAKRDSRKGGKKGGKGKGGGGGAGRGRGVRGVDFGLGIGYNAESGSQVPPPRSAA
VNSLKTGMMQQFKSSFVSGSSNTPSSSAPSFVRPALRGFVSGGTIGGDARPAQSAPTFVP
ASRPAQPAPSVPAPRPAGNINENGNSNPESSRDRSRERKRPSGWDR
NT seq 2301 nt   +upstreamnt  +downstreamnt
atgtcgaagcgcccgaagctcgagggtttcagcatcccgcggcccacctcctacaacttc
gagcgctcgcagcccgtgcagcggctctaccgtccgacggatgacccggacctcgacgac
atcgccttctccgacgacgccccctcagatgcccccgccagcaccgcggtggaaggaaag
gcggaggatgacgaggagatcgacccgctcgacgccttcatggccgagatccaggaggag
atccgcgcgcctcccccgccgcccaagcccgaggcgcttcgccgcgcggactccgacgat
gacgaggatgaccccgtcgagagcttcctgcgggccaagaaggacgccgggctcacgctg
gccgccgacgccatgcgcgctggttacgactccgatgaggaggtctatgctgctgccaag
gccgtcgacgccggcatgatggaatacgattccgatgacaaccccatagtcgtcgacaag
aagaaaatagagcccataccagcactcgatcactcgaccattgagtatgacgctttcacc
aaagatttctacgaggagaagccgtcgatttcaggtatgagtgaccaagaggtagcagat
tatatgaaaagtttggcaattcgggtttctggtttcgatgtgccaaggccaataaaaaac
ttccaggattgtgggtttcctgtaccgctaatgaatgctattgccaagcaagcttatgaa
aaaccaactacaattcagtgccaggctttacctatcgtactttcaggcagagatatcatt
ggtattgcaaaaactggttctggcaaaactgcagcttttgtgctccctatgattgttcat
attatggatcagcctgagcttgagaaagaagaaggtcctataggagtaatttgtgctcca
acaagagaattggcacatcagatatatctcgaagctaagaagtttgcaaagccttacaat
cttcgagttgctgctgtatatggtggtgtttccaaatttgaccagtttaaagaactgaaa
gcaggttgtgaagtagtcattgcaactccagggagattaatagacttgctgaagatgaag
gcattgaagatgttcagggcaacttatctggttcttgatgaagctgatcgcatgttcgat
cttggatttgagccacaaatacgatctattgttggtcaaattagaccagatcgacaaacc
ttacttttttctgcaacaatgccatacaaagtagagcgtttggcaagagaaatattgact
gatcctattagagttacagttggccaagttggcggtgctaatgaagacattaaacaagtt
gttaatgtactcccttctgatgttgagaaaatgccttggcttttggagaaattgcctgga
atgattgatgatggagatgttcttgtattcgcatctaagaaggctagagtggatgagata
gagaaagagttgaatcagagaggattcagaattgcagcacttcatggtgacaaggatcaa
gcttctcgtatggagactctgcagaagttcaaatctgggacgtatcatgttctggttgca
actgatgttgctgcacgaggtcttgacatcaaatcgattaaaacagttgtcaattttgat
attgcaaaagagatggatatgcatattcaccgaattggaagaactggtcgcgctggtgat
aaagatggcactgcatacactctgattacacagaaggaagcacgctttgctggtgaactg
gttcacagtttgattgctgctggccaggatgtaccaaatgaactcatggatctggctatg
aaggatggaagattcagagcaaaacgggactccaggaaaggtgggaagaaaggtggcaaa
ggaaaaggtggtggtggaggtgctgggcgcggtcgtggtgtgcgtggagttgattttggc
ctcggcataggttacaatgctgaatctggttcgcaagtgcctcctccaagatctgctgct
gtaaattcgttgaagacagggatgatgcagcaatttaagagcagctttgtctctggatct
tcaaatacaccaagcagcagtgcgccttcctttgtaagaccagcactccgtggctttgtg
tctggcggcaccattggaggagatgcacggcctgcacagtcggcccccacttttgtccct
gcatcccggccagcgcagcctgccccctctgtccctgcaccgcggcctgcaggaaacatc
aatgaaaatgggaactcaaatccagaaagttcacgggatcggtccagggagagaaaacga
ccatcaggttgggatcgctag

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Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (3)   
   UniProt (2)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (4)   
   Pfam (4)   
All databases (17)   

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