KEGG   Sorghum bicolor (sorghum): 8081490
Entry
8081490           CDS       T01086                                 
Name
(RefSeq) polyadenylate-binding protein 4-like
  KO
K13126  polyadenylate-binding protein
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03015  mRNA surveillance pathway
sbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    8081490
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8081490
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8081490
   03041 Spliceosome [BR:sbi03041]
    8081490
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     8081490
   mRNA cycle factors
    Stress granule specific factors
     8081490
Spliceosome [BR:sbi03041]
 Complex C
  Other components
   Complex C specific factors
    8081490
SSDB
Motif
Pfam: RRM_1 PABP RRM_5 RRM_occluded TC1 GbpC Fin
Other DBs
NCBI-GeneID: 8081490
NCBI-ProteinID: XP_002468087
Position
1:complement(69872964..69877403)
AA seq 659 aa
MPASEMEAPASAHASAAAAAAADSQEESASAPAAANEEAQPAAAAVPALYVGDLHEDVAE
EHLFDAFSKIGTVTSVRVCRDNATSRSLRYGYVNYFSRADAVMALDKLNHSLVLDKPIRV
MWSNRDPDARRSGVGNIFVKNLNNSVDNASLQELFSKFGDVLSCKVAKNEDGTSRGYGFV
QFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDDKFTNLYMKHLDDDITEEL
VKLKFSQFGPIVSVKIMRRPDGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARA
QKKEERKQYLQRLHEEKRNEIITKSNESNVYIKNIHDEVDDDALRARFAEYGNITSAKVM
RDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKEERRAKLQQHFAQL
ARMVGPTNSMIPTGYPQVYFAHPNAHIPQGPPRHGFVYPPMGLSHEWRPNMFPSAPNLPQ
IHSPMMPNSPRHYRSNRGRMGGNMMPLPHAVHAMNYVTHAQPTKEFMSMPRQRFNHSKYF
SNDVMANGLAIHQSDPVSTMNDSFSSYLASAPPAEQKNLLGNRLYPLVERHQPELASKIT
GMLLELDNSEVVTLLCSSEMLSVKVDECVQLLQATKPKTEDHEALHPGFMMESPSVNAS
NT seq 1980 nt   +upstreamnt  +downstreamnt
atgccggcgtcggagatggaagcgcctgcgtccgcgcacgcctcggcggcggcggcggcg
gccgctgatagccaggaggaatcggcgtccgcgcccgcggcggcaaacgaggaggcgcag
ccggcagcagctgcggtgcccgcgctgtacgtcggcgatctgcacgaggacgtggcggag
gagcacctgttcgacgccttcagcaagatcggcactgtcacgtccgtgcgtgtctgccgc
gacaacgccacaagcagatctctccgctatggatacgtgaactacttctctcgggccgac
gctgtgatggctcttgataagttgaatcatagcttggttttggataagccaataagggtg
atgtggtccaacagggatccagatgccaggagaagtggtgttggtaacatttttgttaag
aaccttaataattctgttgacaatgcgagccttcaagaattgttctccaagtttggagat
gttttatcttgtaaagttgccaaaaatgaggatgggaccagcagaggatatgggtttgtt
caatttgcatcgcaagaatcagcagatgaagcaattgggaacctcaatggctcccttttc
aatgatagaaaactgcatgtagctactttcattaagaaaagtgaacgatctgcaaataat
gatgacaagtttactaacttgtatatgaagcatctagatgatgacataacggaggaactt
gttaaattaaagttctctcagtttggtccgatagttagtgtgaagattatgaggagacct
gatgggtcatctttggggtttggatttgttagtttccaaaaccctgaaagtgccattaaa
gcacaagagaccatgcatgggatgctactaggatcgaaagccttgtacgtggcgagggct
caaaagaaggaggaaaggaaacaatatttgcagcgcttacacgaggaaaagagaaatgaa
ataataactaagagcaatgaatcaaatgtctatatcaaaaacatccatgatgaagttgat
gatgatgcacttcgtgctcgctttgctgaatatggcaacatcacatcagcaaaggtcatg
cgtgatgataagggcatcagtaggggctttggatttgtatgctatagtacccctgaggag
gccaagagtgttgtaaatagcatgcgaggtgttatgttttttggaaaaccattgtatgtt
gctattttccaaagaaaagaggagagaagagccaagttgcaacaacattttgctcagctt
gcaagaatggttggacctacgaactctatgatccccactggatatccacaagtatatttt
gcccacccaaatgctcatatccctcaaggtcctccaagacatggatttgtgtatccaccc
atgggacttagtcatgaatggagaccaaatatgttcccctcagcaccaaatctcccgcaa
atacattcaccaatgatgccaaattcaccaaggcactatagaagcaatcggggaaggatg
ggtgggaacatgatgcctcttcctcatgcagttcatgcaatgaactatgtgacacatgca
caaccaacaaaagaattcatgtccatgcctcgacagcgattcaaccattccaagtacttc
tcgaatgatgttatggccaatggtttggctatccatcaaagtgaccctgtttcgacgatg
aatgattctttcagcagctatttggcttctgctccacccgcggaacaaaaaaacttgctt
gggaacaggctctatccgcttgttgagagacatcagcctgaacttgcaagcaaaatcact
gggatgttgttggagcttgataactctgaggtggtcacattgctttgctcgtcagagatg
ttgtcagtcaaggtcgacgagtgtgtccagctgttacaagcaaccaagcctaagacagag
gaccatgaggcattacacccagggttcatgatggagtctcctagtgtaaatgccagttga

  All links  
Ontology (3)   
   KEGG BRITE (3)   
Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (19)   

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