KEGG   Sorghum bicolor (sorghum): 8081948
Entry
8081948           CDS       T01086                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2 isoform X2
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8081948
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8081948
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     8081948
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     8081948
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 8081948
NCBI-ProteinID: XP_002454664
UniProt: A0A921R853 C5XTP2
Position
4:complement(65533122..65543115)
AA seq 614 aa
MSGLLNSNLNSSASNLPDSAGRPFTASFSGQSGSIPGFHHSGLHNTHGSYNLPNMPGSLA
QRNAAMSGFPSSGVQQPGGSIPGRFPSNNLPVAMSQIPHAHSGVSGRGMNFGGGPAFSSS
MNIGGNIQGLSGGSRNSVPGISVSPSLGNSGPRITSSVGNIVSGSSIGRNISTGGLSVPS
IASRMNLSGNAGSGSLNVQGSSRMMNGLLHQQASPQLINMLGSSYPTSGGSLSQNQIQAG
NNSLSSMGMLHDPSDTAPFDINDFPQLSGRPNSAGGPQGQYGSLRKQGVGVNTIVQQNQE
FSIQNEDFPALPGYKGNPSDYNTMELHHKEQLHENVPVMQSQQYPMARSGFNLGSSYLPN
RQQHQQGAKSVQNAGSHNILLRPPSQTSSLGSYDQFLPQYQQPQPQNHFRFQQMSSAAHS
YRDQIQKIQAGPTPPDPYGLLGLLGVIRMNDADLASLALGIDLTTLGLNLNSPDNLYKTF
GSPWSNDPAKGDTDFHIPACYFSEQTPPLQPLLFQKFHILILFYIFYSMPKDEAQLYAAN
ELYNRGWFYHKEVRLWFTRTANVEPLVKTHLYERGSYLCFDPEIWDSVRKDNFVLHYELV
EKRPALPSIAQNVR
NT seq 1845 nt   +upstreamnt  +downstreamnt
atgtcgggcttgctgaattcaaaccttaatagttcagcatcaaatcttccagactcagct
ggaaggccatttacagcatccttttcgggtcaatctggatcaattccaggtttccatcat
tctggcttgcataacactcatggaagttacaaccttccaaatatgcctggatcacttgca
caaaggaatgctgccatgagtggctttccgtcctctggggttcaacaacctggaggtagc
attcctgggagattcccttcaaacaaccttccggttgccatgtctcagattcctcatgca
cattcaggtgtcagtggtagagggatgaattttggcggaggtccggcatttagtagcagc
atgaatattggtggtaacatccaaggcttatccggtggtagtcgcaattctgttcctggg
atatcagtatctccatctttaggaaactcgggtccacggatcacaagttctgtaggaaat
attgtaagtggaagcagtattggaagaaatataagcactggtggtttgtccgtgccaagt
attgcatcacggatgaatctgagtggtaatgctgggagtggtagtctgaatgtgcaagga
tccagtcgaatgatgaatggcttgcttcatcaacaagcatctcctcagttgataaatatg
cttgggagttcatatccaacatctggaggttcattatcacagaaccaaattcaagcagga
aataattctcttagttctatggggatgttgcatgatcccagtgacactgctccatttgac
ataaatgattttccccaattgtctggtcggcctaattctgctggtggtccacaaggacaa
tatgggtcactgcgcaagcaaggagttggtgttaacaccattgtgcaacaaaaccaggaa
ttcagcattcaaaatgaagacttcccagctttgcctgggtataaaggtaacccttcagat
tataatactatggagttgcatcataaggaacaactccacgagaatgtacctgtaatgcaa
tcgcagcagtatcctatggcaaggtcaggctttaacttaggaagtagctacctacctaat
cgtcaacaacaccagcaaggtgctaagtcagtccagaatgctggatcccacaatatttta
ctgagaccacccagtcaaacttctagtttgggatcatatgatcaatttctgccgcaatac
cagcagccgcagcctcaaaatcatttcaggtttcagcagatgtcttctgctgcacattca
tatcgggatcagattcaaaagattcaggcgggaccgacaccacctgatccatatggcttg
ttaggattgctgggagttataagaatgaatgatgctgatttagcatctcttgctttagga
atagatctgacaacattgggtttgaacttgaactcaccagataatctatacaagacattt
ggctctccctggtcgaatgacccagcaaaaggagatactgattttcatattccagcttgt
tacttctctgagcaaactccaccgctacagcccttactttttcagaagtttcacatacta
atactattttacatcttctatagcatgccaaaggatgaagctcagctgtatgctgccaat
gaactgtataatcggggatggttttaccataaagaagtgcgcttatggttcacaagaact
gcaaatgtggaacctctagtcaaaacacacctctatgaacgtggatcttacctttgcttt
gacccagagatctgggattcagtccgtaaggacaactttgttctccactatgagctggta
gagaaaaggccagccctgccttcaatagcacaaaacgttagatga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (5)   
   UniProt (2)   
   RefSeq(pep) (3)   
DNA sequence (3)   
   RefSeq(nuc) (3)   
Protein domain (1)   
   Pfam (1)   
All databases (17)   

Download RDF
DBGET integrated database retrieval system