KEGG   Sorghum bicolor (sorghum): 8086250
Entry
8086250           CDS       T01086                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3
  KO
K14442  ATP-dependent RNA helicase DHX36 [EC:3.6.4.13]
Organism
sbi  Sorghum bicolor (sorghum)
Pathway
sbi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:sbi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    8086250
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:sbi03019]
    8086250
Enzymes [BR:sbi01000]
 3. Hydrolases
  3.6  Acting on acid anhydrides
   3.6.4  Acting on acid anhydrides to facilitate cellular and subcellular movement
    3.6.4.13  RNA helicase
     8086250
Messenger RNA biogenesis [BR:sbi03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Other 3'-5' decay factors
     8086250
SSDB
Motif
Pfam: OB_NTP_bind HA2_C Helicase_C HA2_N DEAD dsrm AAA_22 nSTAND3 ATPase T2SSE AAA_19 AAA_16 ABC_tran NACHT AAA_23 ATPase_2 Myosin_head
Other DBs
NCBI-GeneID: 8086250
NCBI-ProteinID: XP_021306550
Position
1:6947112..6953584
AA seq 1152 aa
MRRGLRRGLGILLVPLPHVPSRPQPTSLAALLLLPRRLDGFSRHSFCSFPGGGRAVEQFS
DDEYDHEYEDLRPSSSVANIDEWRWKLSMLQRNAEEQEIISRDRRDRRDYDQIANLAKRM
GLYSEMYGRVVVASKVPLPNYRPDLDDKRPQREVVIPLSLQRRVEGLVQEHLDRALLPLD
KCGGNTKSGSEMAENANLDEQHDSLLDRSVMEKILQRKSIRMRNFQRSWQESPEGAKMLE
FRRSLPAYKEKERLLAAIARNQVIVISGETGCGKTTQLPQFVLESEIESGRGAFCNIICT
QPRRISAMAVAERVSTERGENLGESVGYKVRLEGIKGKDTHLLFCTSGILLRRLLSDRNL
NGVTHVFVDEIHERGMNEDFLLIVLKELLSRRRDLRLILMSATLNAELFSSYFGGAPTIH
IPGFTHPVRAHFLEDILERSGYKLTSSNQLDDYGQDKVWKTQRQLLPRKRKNQITTLVEE
ALKNSSFETYGSRTRDSLVNWNPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWDDITCL
KDQLKAHPLLGDPNRVLLLACHGSMATSEQRLIFEKPPPNVRKVVLATNMAEASITINDI
VFVVDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGECYHLYPRCVYDAF
ADYQLPELLRTPLNSLCLQIKSLQVGSIGEFLSAALQPPEPLAVENAVEFLKMIGALDGN
ENLTDLGRYLSMLPVDPKLGKMLIMGAVFRCIDPILTVVAGLSVRDPFLLPQEKKDLAGT
AKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSSQTLQAIHSLRKQFSYIL
KDSGLIDSDGNTNNSLSHNQSLVRGIICSGLFPGIASVVHRENSMSFKTMDDGQVLLYVN
SVNAKYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSIVILFGGAVTKGGMAGHLKMLDGY
IDFFMDPSLSECYLQLKEELDKLIQKKLEDPNFDIHKEGKHILFAVQELAAGDLCEGRFV
FGRETSRARLRNPEDDSKSNIIKDGMNPKSLLQTLLMRAGHTPPKYKTKHLKTNEFRAMV
EFKGMQFVGKPKRNKQLAERDAAIEALGWLTQTSGVKPQDENDDDSPLDLTDGMLKLLTR
PRRHSKNNSRKR
NT seq 3459 nt   +upstreamnt  +downstreamnt
atgcgccgcggcctgcgtcgcgggttgggcatcctcctcgtcccgctcccgcacgtaccc
agccgcccgcaaccgacctctctcgcggctctccttctccttccccgccgcctcgatggc
ttctcccgccactccttctgcagcttccccggcggggggcgcgccgtcgagcagttctca
gacgacgagtacgaccacgagtacgaggacctccggccgtcgtcatcggtggcgaacatc
gacgagtggaggtggaagctgagcatgctccagcgcaacgcggaggagcaggagatcatc
tccagggaccggagggaccgccgggattatgaccaaatagccaacctcgccaagaggatg
ggactctacagtgagatgtacgggcgggtcgtggttgcgagcaaggtaccactgccgaac
tacaggcctgatctggatgacaagcggccacaaagagaggtggtgatcccgctgagcttg
cagaggagagtagaaggacttgtgcaggagcatctagaccgtgcgctcttaccactggat
aaatgtggtggcaacacaaaaagtggctctgagatggctgagaatgcaaacctggatgag
cagcatgattctctgcttgatcggtcagtcatggagaagatacttcagaggaagagcatt
cggatgcgaaattttcagagaagttggcaggaatcacctgaaggtgctaagatgctagag
ttccggagatcacttccagcatacaaagaaaaagaaaggcttctagcagccattgcacgc
aatcaggttattgtaatttctggtgagacagggtgtggtaaaacaacacagctgcctcag
tttgtattggaatcagagattgagtctggtcgaggggccttttgtaacataatttgtaca
cagccacgaagaatatctgcaatggcagttgcagaaagggtatccacagagagaggagaa
aatcttggcgaatcggttggctataaagtccgtttggagggaattaagggaaaagataca
catttgcttttctgcaccagtggtatcttactaagacgattactgagtgaccgaaacttg
aatggtgtgactcatgtatttgttgatgaaatacatgaaaggggcatgaatgaagatttc
ctattgattgtactgaaagagctgttatcacggcgccgtgatttgaggttgatattgatg
agcgctactctaaatgcggaactcttctcaagttactttggaggagcgccaactatccat
attcctggattcacacatccagtaagggcacattttttggaagacatattagagaggtca
ggctacaagttgacctcaagcaatcaacttgatgattacgggcaagataaagtctggaaa
actcagagacagctattgcctagaaaaaggaaaaatcaaattactacacttgttgaagaa
gcccttaaaaattcaagcttcgagacctatggttccaggacacgtgattctctagtgaat
tggaatcctgattgcatcggtttcaacctcattgaggctgttctgtgccacatatgtcgc
aaagagcgaccgggtgctgttttagttttcatgactggatgggatgatattacttgcttg
aaggatcaactgaaagcacatcctttgttaggtgatccgaatagggttttgctgcttgca
tgccatggttctatggctacttctgagcagaggctaatttttgagaaaccacctcctaat
gttcggaaggtagtccttgccacgaacatggcagaagcaagtattacaataaatgatatc
gtttttgtcgttgattgtggtaaagcaaaggaaaccacatatgatgctctaaacaatact
ccctgcttactcccctcatggatttcaaaagcttctgcccgtcagaggaggggtagagct
ggccgtgtgcaacctggagaatgctatcatctgtatcctagatgtgtgtatgatgcattt
gcagactatcagcttccagagcttcttagaactcctttgaattcattatgtctgcagata
aaaagtttgcaagtcggcagcattggggagttcctatcagctgctctacagcctccagaa
ccactagctgtcgaaaatgcagtggaattcctgaagatgattggagcattagatggaaat
gaaaaccttactgatcttggacggtacctttccatgcttccagttgatccaaaattggga
aagatgcttataatgggtgcagtttttcggtgcatagatcctatactcactgtagttgct
ggactgagtgttcgggatcctttcctgttgccacaggaaaagaaggatttggcaggaaca
gcaaaatctagattctcagcaaaggattatagtgatcatatggccctcgttcgggcttat
gaaggatggaaggatgcagagagagaagggtctgcttatgaatactgctggagaaatttc
ctttcttctcaaacactacaagccattcactcacttcggaagcaattcagctatatttta
aaggattccggtttgatagactctgatgggaatacaaataacagtttgagccataatcaa
tcattggtccgcggtattatatgttctgggctttttcctgggatagcatctgttgtgcat
cgagaaaactcaatgtcctttaagaccatggatgacggccaagttcttctttatgttaat
tcagtgaatgcaaaatatcagactatcccatatccatggctggtctttggtgagaaggtg
aaagtgaatgctgtcttcatccgtgattcaactggagtatcagactccatagtgattctg
tttggtggtgctgtaacaaaaggaggcatggctgggcacttgaagatgcttgatggctac
attgatttctttatggatccgagcctgtctgaatgctacctgcaactcaaagaagaactt
gataaacttatacagaagaagcttgaagacccaaactttgacatccacaaggaaggcaag
cacatcctattcgctgtacaagagcttgctgccggtgacctatgcgaaggaaggtttgtg
tttggccgtgagacgagccgtgccaggctccggaatcctgaggacgacagcaagagcaac
atcataaaggacgggatgaaccccaagagcctgctgcagacactgctgatgcgggccggc
cacaccccacccaagtacaagacgaagcacctcaagacgaacgagttcagggccatggtg
gagttcaagggcatgcagttcgtggggaagccgaagcggaacaagcagctcgcggagcgg
gacgccgccatcgaggcgctggggtggctgacgcagacgtccggcgtgaagccacaggac
gagaacgacgatgactcgccgctggacctgactgatggcatgctgaagctgctcaccaga
ccgaggcggcactcgaagaataactctagaaaacgatga

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