KEGG T01086: SORBI

Sorghum bicolor (sorghum): SORBI_04g007000

Entry

SORBI_04g007000 CDS T01086

Gene name

SORBIDRAFT_04g007000, Sb04g007000

Definition

hypothetical protein

Orthology

K14310

nuclear pore complex protein Nup205

Organism

sbi Sorghum bicolor (sorghum)

Pathway

sbi03013

RNA transport

Class

Genetic Information Processing; Translation; RNA transport [PATH:sbi03013]

SSDB

Motif

Pfam:

DUF3414

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 1850 aa
MAPLPPRELLSVIEAALLGSAAPSPAQRVELLHAVRDAAPTFRTLLSYPGPKASDRTQVE
SKEVRLPGMPPITLDDTDVQTALKLSDELNLNEIECVRLLVDANREWVLYGREPLEIYRL
AAGLWYMERRDLITALYILLRSVALDQGLDADLMSEIEEQIQPLFNDGLRQRIISLVKEL
NREEPAGIGRPSSERYVLDFRGALVERRAIVSRERLSLSHCLTLSALIKLMSPREVKDVF
SILKDCAAEANQNSSVELQITYGVLFSLVATFISDALSPLEKALLSSSDSSFRREFHELV
MKTGNNTTIEGFVGVVRLAWSVHLMLTQDRSNSREMSDIWSCLEIVYRQNSFEFLREQVL
KTAAYQNDDEDIVYMYTGYTHKLMMCFISHPTSRDKIKEIKEKAMTALSPYGPPRSHRED
LGRNGEQDDQPTKEPFVSLLELVREIYQKEPELGNGNEELWTFVIYAGEDHTNTQTLVAF
LGLLSTLASTEVGAAKVYELLQGKTYRSVGWSTLFDCLSIYEEKFKKSIQSSANIPPDFP
EGDAQALVAYLAVLQKVVENGNPMERKKWFPDIEPLFKLLSYENVPPYLKGALRNSITAF
IKVSPLLKDAIWNYLEQYDLPVVTAPLGHHTATQVYDMRFELNEVEARRESYPSTISFLR
LINALIVEERNISDKGRRFMGIFKFVYEDVFGPFPQRAYADPLEKWELALACLEHFRMVL
SMYDIKDDDIYASVNTLAPSSIERQLPLLELLKDFMSGKVAFRNIMNIILVGVDSLINER
TTQTYGIILEKAVHLSLEIFILVMERDLALADVFRPLYQPLDVILAQSHRQIVALLEFVR
YDYLPQIQQCSIKIMGILSSRIVGLVQLLLKADVGKMVIEDYAACLEFRFDDFQVIEDTK
DDVGVLILQLLVDNISRPAPNITHLLLGFDVNGSIEQTVLKPKSHYSCLKIILDNIEKAT
KPDINALLHEFSFQLLYELCLDPLTCWPVMDLLSTKKYQFFSKLELIFSLPTDDGCQHVG
TIGVTPLPKRNSNQSLRISMLHERAWLLKMLALALHISDISSSVYKEACLAILYHTFGQC
AENFQSSSLFDSRALTSISDVPAKRNKVLDLLEVLQFRCPDISMKYPQLLSNLGIESKIE
EILRNSATSENGGVYYYSERGDRLIDLDAFHEKLLQMSQELNPQLSESEKAGLKESVHHL
LKWAWRYNKNLEEQAAQLHMLTGWSQIVEVAVSRRMSLFEERSQLLFELLDASLNATTSP
DCSVKMAYVLTNVSLTCMAKLRDERFICPTGTDSDAVTCLDIILSKQLPNAACNSLLFKL
VMATLRNESSETLRRRQYALLLSYFQYCSSILDSDVPPSVFRFLLLEEQEGDDEDITLQK
VLKEHNELAHANFSIIRKEAQAIVDLVTRDAVHGSEAGKAISFYVLDALISIDHEKYFLN
QLQSRGILRSCLSDVTNYLSKDSSLASESSQRFCTVDAQFSLLLRISHHYGKHGAQILLS
MGALQNLSSCNLMGGQKKGNPRAISKIVKERTGEIDKKRSLITPVLRIVTSFTSLVDSAD
FLEVKNKIVREIVDFTKQHQSVFNSILRENMTGANLLTLEQLNMAVSILSKVWAYEENEE
CSYIQDLFSLMHSLFSLDFGSLNFMQSPNIIENHKSELIAFGLCFSLVSYLYVLATKKNM
RFQVSYENNSDQQHPTLQMVSDLLNSVTLALERVGEEKYMLLNKIHDLNELSRKEVDEII
KVCMKQDCISPNDDIRKRRYIAMIDLCCMAGNRDQLITLLLQITECAVTILLIHFQDDAS
AKGLSSFSDELLPVLERLEHLKEDKVGCNLKLFHRSVTTLKEMTIRTMTL

NT seq 5553 nt +upstreamnt +downstreamnt
atggcgccgcttcctccgcgcgagctcctctctgtcatcgaggcggcgctgctgggctcc
gcggcgccgtcgccggcgcagcgcgtggagctcctccacgccgtccgcgacgccgccccc
acgttccgcacgctactctcctatccggggccgaaggcgtctgatcggactcaggtggag
agcaaagaggtgcggctcccaggcatgccgcccatcactctcgatgacaccgacgtgcag
actgcccttaagttaagtgatgaactcaatctgaatgagattgagtgtgttcgtttgcta
gttgatgctaacagagagtgggttttgtatggtcgagagccattggaaatatatagactt
gcagctggcctatggtacatggagagaagggatcttataactgctctgtacattctgttg
cgatctgttgcacttgaccaaggtcttgatgctgatctgatgtctgaaattgaggagcaa
atccagcctttatttaatgatggtcttcgacaacggataatttcccttgtgaaggagctg
aaccgggaagaaccagctggaattggccgaccaagctctgagcgttatgtgcttgatttc
agaggagctcttgtggaaagaagggcaattgtctcaagagagagattaagtttgagccac
tgcctcactctttctgcacttattaaactaatgagccccagagaggttaaggatgtattt
tcaatattgaaagactgtgcagctgaagcaaatcaaaatagtagtgtggagctccagatc
acctatggagttctgttctctcttgtggcaacttttatttctgatgccctaagtcctctt
gagaaagcattattgtcatcgtctgattcctcatttagacgtgaatttcatgaacttgtg
atgaagacaggtaacaatacgactattgaagggtttgttggtgttgtgagacttgcatgg
tctgtacatttgatgctaactcaagatcgaagtaattcaagagaaatgtcagatatttgg
tcatgtctggaaattgtctatcgtcaaaattcttttgagtttttgcgggagcaagttttg
aaaacagctgcataccagaatgatgatgaggacattgtctacatgtacactggctacact
cacaaactaatgatgtgctttatttcccaccctacttccagagataagataaaggaaatt
aaggagaaagcaatgactgccctcagtccatatgggccaccgcggagtcatcgggaagat
cttggtagaaatggggaacaagatgatcagcctactaaggagccttttgtatccctgctg
gaactagttagagaaatctatcagaaagagcctgagctagggaatggtaatgaggaattg
tggacctttgttatatatgcaggagaagaccacaccaacacacaaactcttgtggccttc
cttggacttctcagtactttggcttccaccgaagttggtgctgccaaagtctatgagctt
ctccagggaaaaacttaccgttcagtgggttggagcactttgtttgattgcttatctatc
tatgaggagaagttcaaaaaatcaattcaatcttctgcaaacataccacctgattttcct
gagggggatgcacaggctcttgttgcatatttagctgttcttcagaaggtggtggaaaat
gggaatcctatggaacgcaagaagtggttccctgacattgaacctttattcaagcttctc
agctatgaaaatgtgcctccatacttgaagggggctctgcgaaattcaataactgcattt
atcaaagtgtcacccctactaaaagatgctatttggaattatcttgagcaatatgatctt
cctgtggttacggctccattaggtcaccatacagcaacacaggtctatgatatgaggttt
gagttgaacgaagtagaagcgaggagggagagttacccctcaaccatatctttcctcaga
ttgatcaatgcacttattgtagaagaaagaaacataagtgacaaaggccggaggttcatg
ggtatctttaagtttgtttatgaggatgtctttggtccttttcctcagagagcttatgct
gaccccctggaaaaatgggagctcgcacttgcctgcttggagcatttccgcatggttttg
agcatgtatgacataaaggatgatgatatttatgcttctgtgaacacattagctccttcc
tctatcgagagacagctccctctgctagaactactcaaagatttcatgagtgggaaagtt
gctttccggaatattatgaacatcatattagtgggtgttgactctcttatcaatgagcga
actacccagacatatggtatcattttggagaaagctgtccatctatctcttgaaatattt
attcttgtcatggagagagatctggctcttgctgatgtttttcggccactctaccagcca
ttggatgttatattagctcaaagtcatagacaaattgtagcattgctagagtttgtacga
tatgattatcttccccaaattcaacagtgttctatcaaaattatgggcatcctgagttct
agaatagttggtttggtacagttgcttttgaaagctgatgttggaaaaatggtaatagaa
gattatgctgcttgcttggagttccggtttgatgattttcaggtcatagaagacacaaaa
gatgatgttggagttctaatactgcagttgcttgttgacaatatttctcgtccagctcca
aacattacacatttgctcttgggatttgatgtcaatggatccattgagcaaacggttcta
aaaccaaaatcccactacagttgtttgaagataatccttgacaatattgaaaaagcgaca
aagccagacataaatgccttactgcacgaattcagttttcagcttctctatgagttatgt
cttgatcctttaacttgttggcctgtgatggatctcctgagtacaaagaagtaccagttc
ttttctaagttagaactcatattttccttgcccactgatgacggatgtcagcatgttgga
accatcggagtgacaccgctcccgaaaaggaacagtaaccaatctcttcgtatcagcatg
ctccatgagagggcatggttgctaaagatgttagcactggcattacatatatccgatata
tcatcatctgtatacaaggaagcctgcttggctattctttatcatacttttggtcagtgt
gctgagaacttccagagctcaagtttgttcgattctcgtgctttgactagcatcagcgat
gtaccagcaaagaggaataaggttttggacttgcttgaggttctacagttcagatgcccg
gacatttcaatgaagtatccacagctgctttccaacctgggaattgaatcaaagattgaa
gagatcctaaggaactctgcaacttctgaaaacggtggtgtatattattattcagagaga
ggtgatcgactgattgatcttgatgctttccatgaaaaacttctccagatgtcacaagaa
ttgaacccacaattaagcgagtctgagaaagccggactaaaagaatcagttcatcatttg
ctgaaatgggcttggcgatataataaaaatcttgaagaacaggctgcccaacttcacatg
ttaactggctggtcacagattgttgaagttgctgtatcaagaaggatgtcattatttgag
gagcgttctcagctattgtttgagctgcttgatgcttcattgaatgccacgacatctcca
gattgttcagtgaaaatggcatatgttttaacgaatgtatcgttgacctgtatggctaaa
ctgcgggatgaaagattcatatgcccaactggtacagattctgatgcggttacttgcctt
gacattattttgtcaaagcagctaccaaatgcagcttgtaactcattgctattcaagctt
gtgatggcaacgctaagaaatgaatcatctgaaaccttgagaagacggcaatatgcatta
ttactgagttattttcagtattgtagtagcattcttgactctgatgtccctccatcagtt
tttcggttcttgctactggaggagcaagagggtgatgatgaggacatcactcttcaaaag
gttctcaaggagcacaatgagttagcacatgccaacttttccatcataaggaaggaagct
caagctatcgttgatttggttactagggatgctgtccatggtagtgaagctgggaaagca
atttccttttatgttcttgatgcattaattagtattgaccatgaaaagtatttcttaaat
caacttcaaagtcgagggattcttagatcatgtctgagtgatgttacaaactatttgtca
aaggattcgtcattggcatcagaatcttcacagcggttttgcactgtcgatgctcagttt
tcattactgctgagaataagtcatcattatggcaaacatggtgctcagattctgttgtcc
atgggtgctttacaaaatctttcatcatgcaacctcatgggtgggcagaaaaagggaaat
ccaagggcaatctccaaaattgtaaaagaacggactggtgaaattgacaagaagaggtca
cttattacacctgtactgcgaatagtcacctcttttacatcacttgtggactcggctgat
tttcttgaggtgaagaacaagattgtacgagagatagtggacttcacaaagcagcatcag
tcggtttttaatagcattttaagggagaacatgactggagctaatttgctcacattggag
cagcttaacatggcggtttctattctcagcaaggtttgggcgtatgaggaaaatgaggaa
tgcagctatattcaagatctattttccttgatgcattctctttttagcctcgattttggg
tctctaaattttatgcaatcaccaaacattattgagaatcataagtcagaattgatagca
tttggtctttgcttcagccttgtctcttacctttatgttctggctacaaagaagaacatg
cgatttcaagtttcgtatgaaaataatagtgatcagcagcacccaacactccaaatggtt
tctgatcttctgaattcagtaacacttgccctagaaagagtaggtgaagaaaaatatatg
cttttaaacaagatccatgacttgaatgagttgtccagaaaggaggttgatgagataata
aaagtatgcatgaagcaagattgcatctctcccaatgatgacatccgtaagaggaggtac
attgcaatgatagatttgtgttgcatggctggcaaccgagaccagcttataacccttcta
ctgcaaataacggaatgtgccgttactattctccttattcattttcaggacgatgcttct
gcaaaaggtctttcttcattttctgatgaacttcttcctgtgctggagagactagagcat
ttgaaagaggacaaagttggatgtaatctgaagttgttccacagatccgttactacactt
aaggagatgaccatcagaaccatgaccctatga

All links

Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SBI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (12)   

Download RDF

DBGET integrated database retrieval system