KEGG T01086: SORBI

Sorghum bicolor (sorghum): SORBI_05g000450

Entry

SORBI_05g000450 CDS T01086

Gene name

SORBIDRAFT_05g000450, Sb05g000450

Definition

(RefSeq) hypothetical protein

K04646

clathrin heavy chain

Organism

sbi Sorghum bicolor (sorghum)

Pathway

sbi04144

Endocytosis

Brite

KEGG Orthology (KO) [BR:sbi00001]
Cellular Processes
  Transport and catabolism
   04144 Endocytosis
    SORBI_05g000450 (SORBIDRAFT_05g000450)
Membrane trafficking [BR:sbi04131]
Endocytosis
  Clathrin-mediated endocytosis
   Clathrin
    SORBI_05g000450 (SORBIDRAFT_05g000450)
Exosome [BR:sbi04147]
Exosomal proteins
  Proteins found in most exosomes
   SORBI_05g000450 (SORBIDRAFT_05g000450)

SSDB

Motif

Pfam:

Clathrin

Other DBs

NCBI-ProteinID:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 1162 aa
MMSQMEGGCPVDYNTITDLFLQRNMIREATAFLLDVLKPNLPEHAFLQTKVLEINLVTYP
NVADAILANGMFSHYDRPRIAQLCEKAGLYLRALQHYSELPDIKRVIVNTHAIEPQALVE
FFGTLSREWALECMKDLLLVNLRGNLQIVVQAAKEYSEQLGVDACIKLFEQFKSYEGLYF
FLGSYLSSSEDPDIHFKYIEAAARTGQIKEVERVTRESNFYDAEKTKNFLMEAKLPDARP
LINVCDRFGFVPDLTHYLYTNNMLRYIEGYVQKVNPGNAPLVVGQLLDDECPEDFIKGLI
LSVRSLLPVEPLVDECEKRNRLRLLTQFLEHLVSEGSQDVHVHNALGKIIIDSNNNPEHF
LTTNPFYDSRVVGKYCEKRDPTLAVVAYRRGQCDDELINVTNKNSLFKLQARYVVERMDG
DLWDKVLQPENEYRRQLIDQVVSTALPESKSPEQVSAAVKAFMTADLPHELIELLEKIVL
QNSAFSGNFNLQNLLILTAIKADPSRVMDYVNRLDNFDGPAVGEVAVEAQLYEEAFAIFK
KFNLNVQAVNVLLDNIRSIERAEEFAFRVEEDAVWSQVAKAQLREGLVSEAIESFIRADD
AAHFLDVIRAAEEANVYDDLVKYLLMVRQKAREPKVDGELIFAYAKIDRLSDIEEFILMP
NVANLQNVGDRLYDEELYEAAKIIYAFISNWAKLAVTLVKLKQFQGAVDAARKANSAKTW
KEVCFACVDAEEFRLAQICGLNIIVQVDDLEEVSEYYQNRGCFNELIALMESGLGLERAH
MGIFTELGVLYARYRPEKLMEHIKLFSTRLNIPKLIRACDEQQHWKELTYLYIQYDEFDN
AATTIMNHSPDAWDHMQFKDVCVKVANVELYYKAVHFYLQEHPDLINDMLNVLALRLDHT
RVVDIMRKAGQLHLVKPYMVAVQSNNVSAVNEALNELYVEEEDYERLRESVDMHDNFDQI
GLAQKLEKHELLEMRRIAAYIYKKAGRWKQSIALSKKDNMYKDCMETCSQSGDRELSEDL
LVYFIEQGKKECFASCLFICYDLIRPDVALELAWMNNMLDFAFPYLLQFIREYTSKVDDL
VKDKIESQKEERAKEKEEKDLVAQQNMYAQLLPLALPAPPMPGMGGPPPMGGMGMPPMGG
MGMPPMGPGPMPAFGMPPMGSY

NT seq 3489 nt +upstreamnt +downstreamnt
atgatgtcacaaatggagggaggctgcccagtagattataatacaataactgatcttttc
cttcagaggaatatgatacgagaggcaacagcttttctgttggatgttctgaaaccaaac
ttgccagagcatgcttttcttcaaaccaaggttttggagataaacttagtgacttacccg
aatgttgctgatgccattcttgctaatggtatgttcagtcattacgaccgccctcgtatt
gctcagctgtgtgaaaaggctggtctgtacttgcgagctctccagcattactcagagttg
cctgatatcaagcgtgtcattgtaaatacccatgccattgaaccacaggcacttgttgag
ttctttggtaccttgtcaagggagtgggctttggagtgcatgaaagaccttctactggtt
aatctgaggggaaatcttcagattgttgtgcaggctgcgaaagaatactctgagcagcta
ggggttgacgcttgcatcaaattatttgaacaattcaaatcttatgagggcctttacttt
ttcttgggatcctatctgagctccagtgaggacccagatatccatttcaagtacatagaa
gcagctgcaaggactggacagatcaaagaagttgaacgtgtaactagagagtcaaacttc
tatgatgccgagaagacaaagaactttttgatggaagcaaaactacctgatgctcgtcca
ctgattaatgtttgtgaccgctttggttttgtgccagatctcactcactatctgtacacc
aacaacatgcttcgatatatcgaaggctatgttcagaaggtgaatcctgggaatgctcca
ttggtagtggggcaactacttgatgatgagtgccctgaagattttatcaagggtttgatt
ctctctgttcgttctctccttcctgttgagcctctggttgatgaatgtgagaagaggaac
cgcctacgtttgctcactcaattcttggagcacttagtgagtgaaggtagccaagatgtg
catgtccataatgctcttgggaaaatcatcattgacagcaacaacaatcctgagcatttc
cttactaccaacccattttacgattctcgtgttgtgggcaaatattgtgaaaagcgggat
cctacacttgccgttgttgcttacagacgtgggcagtgtgatgatgaacttattaatgtc
actaacaaaaactcattattcaagctgcaagctaggtatgtggttgagagaatggatggt
gatctgtgggataaagttcttcagcctgagaatgaatatagaaggcaactcattgaccaa
gtggtttcgactgcattacctgagagcaagagccctgagcaagtgtctgctgctgttaag
gctttcatgactgctgacctgccacatgaactgattgagcttcttgaaaagattgttctt
cagaattctgctttcagtggaaatttcaatctgcagaacctgctcatcttgactgctatc
aaggcagatccatccagagtcatggactatgtcaacagactcgataactttgatgggcct
gctgttggagaagttgctgttgaagcacaactgtatgaggaggcttttgctatattcaag
aagttcaacttaaatgtgcaggctgtcaatgttctcttggacaacatccggagcatagaa
agagccgaggaatttgcttttcgtgttgaagaagatgctgtttggagccaggttgccaaa
gcccagttacgtgaaggtctggtcagtgaagcaattgagtccttcattcgcgcagatgat
gctgcacacttccttgatgtcatccgtgctgctgaagaagctaatgtgtacgatgattta
gtgaagtaccttctgatggtaaggcaaaaagcacgggaacccaaagtcgatggagaactc
atctttgcatatgctaagattgacaggctcagtgacattgaggagttcattcttatgcca
aatgttgccaaccttcaaaatgtcggtgaccgtctgtatgatgaagaactatatgaagct
gcaaagatcatctatgctttcatctcgaactgggctaagctggctgttaccctggttaag
ctgaagcagttccaaggtgctgtggatgctgctcgcaaggctaacagtgccaaaacatgg
aaggaggtctgctttgcttgtgttgacgctgaggagttccgtcttgcacaaatatgtggt
ctcaatattattgttcaggttgatgacttggaagaagtcagtgaatactaccagaataga
ggatgcttcaatgaacttattgctctcatggagagtggtcttggacttgaacgtgcacac
atgggcatcttcacagaattgggagttctatatgctagataccgccctgagaagcttatg
gagcacatcaaacttttctccacccgtcttaatattcctaagcttattcgagcttgtgat
gaacagcagcactggaaagaacttacctacctgtacatacagtatgatgaatttgacaat
gctgccaccaccattatgaaccactctccagatgcatgggatcatatgcagttcaaggat
gtttgcgttaaagttgcaaatgttgagctatattacaaggcagttcacttctatttgcaa
gagcatcctgatctcattaatgatatgctaaatgtgcttgcacttcggttagatcatacc
agagttgtagacataatgcgcaaggctggccaattgcatcttgtgaaaccatatatggtt
gcagttcagagtaacaatgtctctgctgtgaatgaagccttgaatgagctttacgttgaa
gaggaggactatgagagactccgggaatcagttgatatgcacgacaactttgaccagata
ggtcttgcccagaagcttgagaagcatgaattgcttgaaatgaggaggattgctgcctac
atttacaagaaggctggcaggtggaagcaatccattgctctatcaaagaaagacaacatg
tacaaggattgcatggagacatgctcacaatctggcgaccgtgaactgtcagaggacttg
cttgtctatttcattgagcagggtaagaaagaatgctttgcatcctgcctcttcatttgc
tacgacttgatccggccagatgtcgctcttgagcttgcatggatgaacaacatgttggac
tttgccttcccatacctgttgcagttcatccgtgagtacactagcaaggtggatgattta
gtgaaggacaaaattgagtcgcagaaggaagaaagagccaaagagaaggaggagaaagat
cttgtggctcagcagaacatgtatgcccaactgcttcctcttgctttgcctgctccgcca
atgcctggcatgggtggtccacctccgatgggtgggatgggcatgcctccaatgggtgga
atgggtatgccgccgatgggccctggtccgatgccagcattcgggatgccaccaatggga
agctactga

All links

Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   UniGene (1)   
   JGI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (1)   
   Pfam (1)   
All databases (16)   

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