KEGG T01086: SORBI

Sorghum bicolor (sorghum): SORBI_06g013930

Entry

SORBI_06g013930 CDS T01086

Gene name

SORBIDRAFT_06g013930, Sb06g013930

Definition

hypothetical protein

Orthology

K00164

2-oxoglutarate dehydrogenase E1 component [EC:1.2.4.2]

Organism

sbi Sorghum bicolor (sorghum)

Pathway

sbi00020	Citrate cycle (TCA cycle)
sbi00310	Lysine degradation
sbi00380	Tryptophan metabolism
sbi01100	Metabolic pathways
sbi01110	Biosynthesis of secondary metabolites

Class

Metabolism; Carbohydrate metabolism; Citrate cycle (TCA cycle) [PATH:sbi00020]
Metabolism; Amino acid metabolism; Lysine degradation [PATH:sbi00310]
Metabolism; Amino acid metabolism; Tryptophan metabolism [PATH:sbi00380]

SSDB

Motif

Pfam:

Transket_pyr E1_dh

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 1025 aa
MGLFRAASGLARVALRRNLSRAAASPFAGGGGAVPRAAPARYFHSTRPRWFAAPEPRAVP
LSRLTDSFLDGTSSVYLEELQRAWEADPNSVDESWDNFFRNFVGQAAATSPGLSGQTIQE
SMRLLLLVRAYQVSGHLKAKLDPLGLEERPVPDVLDPAFYGFSEADLDREFFLGVWRMAG
FLEENRPVQTLRSVLERLEQAYCGTIGYEYMHIPDREKCNWLRDRIETVNPREYSYDRRQ
VMLDRLIWSTQFENFLATKWTTAKRFGLEGAETLIPGMKEMFDRAADLGVESIVIGMPHR
GRLNVLGNVVRKPLRQIFSEFSGGTKPVNEGEGLYTGTGDVKYHLGTSYDRPTRGGKQIH
LSLVANPSHLEAVDPVVAGKTRAKQYYSNDRDRTKNLGVLLHGDGSFSGQGVVYETLHLS
ALENYTTGGTIHIVVNNQVAFTTDPKSGRSSQYCTDVAKALDAPIFHVNGDDLEAVVHVC
ELAAEWRQTFHSDVVVDIVCYRRFGHNEIDEPSFTQPKMYKVIRNHPSALEIYQRKLLES
GKISKEDIDKLNKKVSTILNEEFQNSKDYVPNKRDWLSAYWTGFKSPEQISRIRNTGVKP
EILKRVGEAMTTLPENFKPHRAVKKIFDLRRQMIETGEGIDWAVGEALAFATLIIEGNHV
RLSGQDVERGTFSHRHSVIHDQETGEQYYPLDHLVMNQDEELFTVSNSSLSEFAVLGFEL
GYSMENPNSLVIWEAQFGDFANGAQVIFDQFLSSGESKWLRQTGLVVCLPHGYDGQGPEH
SSARLERFLQMSDDNPYVIPEMDPTLRKQIQECNWQVVNVTTPANYFHVLRRQIHRDFRK
PLIVMSPKNLLRHKDCKSNLSEFDDLAGHPGFDKQGTRFKRLIKDQNNHKDLEEGINRLV
LCSGKVYYELDEERRKAERTDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNM
GAYSYINPRLLTAMKALGRGGIEDIKYVGRAPSAATATGFYSVHVQEQTELVKKALQRDP
INYPF

NT seq 3078 nt +upstreamnt +downstreamnt
atggggctgttccgggcggcgtccggcctggcccgtgtggcgctgcggcggaacctctcg
cgcgccgcggcgagccccttcgccggcggcggtggcgccgtccctcgtgccgcgccggcg
cgctacttccactccacccgcccgcgctggttcgctgcgcctgagccccgtgcggtgccg
ctctcgcgtctcaccgacagcttcctcgatgggaccagcagcgtctaccttgaggagctg
cagcgggcctgggaggccgaccccaactccgtcgacgagtcctgggacaacttcttccgc
aacttcgtcggccaggctgcggccacctcaccgggcctctccggccagaccatccaggag
agcatgaggctgctgctgcttgtcagggcgtatcaggtgagtggccacctgaaagccaag
ctcgacccgctcgggctggaggagcgcccggtcccagacgtgctggacccagcgttctat
gggttctctgaggctgacttggaccgcgagttcttccttggggtgtggaggatggctggg
ttccttgaggagaaccggccagtgcagacgctgcgttccgtgctggagcggctcgagcag
gcctactgcggcaccattgggtatgagtacatgcacatacctgacagggagaagtgcaac
tggctcagggataggatcgagacagttaacccaagggagtactcttatgatcgtcgtcag
gtcatgctggataggcttatctggagcacacagtttgagaatttcttggctaccaagtgg
acgactgcaaaacggttcggtcttgaaggcgctgagactctgatccctggcatgaaggag
atgtttgacagggcagctgatcttggtgtagagagtattgtcattgggatgccacataga
ggcaggttaaatgtcttgggaaacgttgtgaggaagcccttgcgacagatattcagcgag
tttagtggtggtaccaagcctgtcaatgaaggggaggggttgtatacagggactggtgat
gtcaagtaccatcttggaacttcatatgataggcctaccagaggtgggaaacaaatccat
ctgtcactggttgcaaacccgagtcatttggaagcagttgatccagttgttgctgggaag
acaagagcgaagcagtactattctaatgaccgcgacaggaccaagaatttgggagtgttg
ctgcatggtgatggtagtttctcagggcagggagttgtgtatgagacactgcatctcagt
gcccttgaaaattacaccactggtgggacaatacatattgtggtcaataatcaggttgct
ttcactactgatccaaagtcagggagatcctcgcagtattgcacagacgtagcaaaagca
ttggatgctcctattttccatgttaacggtgatgatttggaggccgttgttcatgtctgt
gagctcgctgcagaatggcgacagacatttcattcagatgtagtggtggacattgtatgc
taccggcgatttggccataatgaaattgatgagccgtccttcacccaacctaagatgtac
aaggtgattaggaaccatccaagtgcgcttgagatttatcaaagaaagttgttggagtct
gggaagatctcaaaggaagatattgataagttaaacaagaaggtcagcactatacttaac
gaggaattccagaatagcaaagactatgttcccaacaagagggactggctttcagcttac
tggactgggttcaagtcaccagagcagatttcgcgtatccgaaacaccggtgtcaagcca
gagattctaaaacgtgttggagaagccatgactactctgccagaaaattttaagcctcac
agggctgtgaagaagatttttgatctgcggcgtcagatgattgagactggagaaggcatt
gattgggcagttggtgaagcactcgcttttgctactcttataattgaggggaaccatgtc
aggttaagtggacaggatgttgagaggggtacattcagccaccgtcattctgtcatccat
gaccaagaaactggagagcagtactaccctctggatcatcttgttatgaatcaagatgag
gagctttttactgtgagcaacagttccctgtcagaatttgctgttttgggctttgaattg
ggttactccatggagaacccgaactcattggtcatatgggaagctcagtttggtgatttt
gcaaatggagctcaagtgatatttgatcagttcctgagtagtggggagtcaaaatggctc
cgccagactggccttgtcgtttgccttcctcatggatatgatggtcaggggcctgaacat
tctagtgcaagattggagcgctttcttcagatgagtgatgacaacccttatgttatacct
gagatggatccaacactgcggaagcaaatccaggagtgcaattggcaggtcgttaatgta
acgactcctgcgaattatttccatgttctgcgtcgccagatacaccgggacttcaggaag
cctttgattgtgatgtccccaaagaacctccttcgccacaaggactgcaagtcaaaccta
tctgaatttgatgatcttgcgggccaccctggattcgacaagcaagggacacgcttcaag
cggctcattaaggaccagaataatcacaaggaccttgaggagggaatcaaccgtctagtt
ctttgctctgggaaggtgtattatgaactggatgaagaaagaaggaaggcagagcgcact
gatgttgctatatgtagagttgagcagctctgcccgttcccctatgacctcattcagcgc
gagttgaagagatatccaaatgctgagatcgtgtggtgccaggaggagccgatgaacatg
ggagcgtacagctacatcaacccgcggctgctgacggcgatgaaggctcttggccgtggt
ggcatcgaggacatcaagtacgtcggcagggccccttcggctgctaccgcgacgggcttc
tactctgtgcacgtgcaggagcagacggagctggtgaagaaggcgctgcagcgcgacccc
atcaactacccgttctga

All links

Pathway (5)   
   KEGG PATHWAY (5)   
Chemical substance (13)   
   KEGG COMPOUND (13)   
Chemical reaction (5)   
   KEGG ENZYME (1)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (6)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   JGI-SBI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (35)   

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