KEGG T01086: SORBI

Sorghum bicolor (sorghum): SORBI_06g033130

Entry

SORBI_06g033130 CDS T01086

Gene name

SORBIDRAFT_06g033130, Sb06g033130

Definition

hypothetical protein

Orthology

K03144

transcription initiation factor TFIIH subunit 4

Organism

sbi Sorghum bicolor (sorghum)

Pathway

sbi03022	Basal transcription factors
sbi03420	Nucleotide excision repair

Class

Genetic Information Processing; Transcription; Basal transcription factors [PATH:sbi03022]
Genetic Information Processing; Replication and repair; Nucleotide excision repair [PATH:sbi03420]

SSDB

Motif

Pfam:

Tfb2 Helicase_C_3

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 451 aa
MPQVMVVARNFMDMVAALPAGKLDMLYDSAFICEAVLRSLPPLAKKYALQMLYVLAPVTA
AAMEEWVLNEYAAKHKVAIDKLLQLRVFVEVRDRRRDVSYKMNQKFQGNMQKYLVDGGSL
PREPLPLSVTGRLPTPADLEAYALDQWECFLLQLINSSQVEKGTSFSSSMMKTFQRGLLS
SRDGEASKLTENGFQFLLMETNAQLWYIMREYISSAEERGVDPTELISFLLELSFHKLGA
AYSLNTLTDVQRIAIRDLAELGLVKQQQGRTDRWFIPTQLATNLSASLSDSSSNKEGFVV
VETNFRMYAYSTSKLHCEILRLFSRVEYQLPNLIVGAVTKESIYGAFENGITAEQIISFL
RQNAHPRVADKIPTVPENVTDQIRLWETDRNRVEMIPSHLYEDFPSKEWFEQCCDYARDN
GYLLWEDSKRMRLIVRGEFHPEMREFLRRQR

NT seq 1356 nt +upstreamnt +downstreamnt
atgccgcaggtaatggtggtggcacggaacttcatggatatggtggctgctcttcctgcg
ggcaagcttgatatgctctatgactcagcctttatctgtgaggcagtactcaggtcactt
cccccactggcaaagaagtatgcactgcagatgttgtatgtgttggcaccggtgaccgct
gcagcaatggaagagtgggtgctcaatgaatatgctgccaagcacaaggttgccattgat
aagcttctccaactcagggtctttgtcgaagtgcgcgacaggcgacgggacgtgagctac
aagatgaatcagaagttccagggaaacatgcagaagtatttggttgatggtggaagttta
ccaagggaacctttaccattaagtgtcactggtcgattgcccactccagcagatctggaa
gcctatgctcttgatcaatgggagtgcttcttgttgcaattgatcaattcatcccaagtc
gaaaaagggacaagttttagctcctccatgatgaagacatttcagcgtggtcttctgagt
tcaagggacggtgaagcttcaaagttgactgagaatggcttccaatttcttctgatggaa
acgaatgcacaactttggtacataatgagagaatacatttcatctgcagaggaacgtgga
gtggaccctacggaactgatatcatttctcttggaacttagctttcataaattgggagcg
gcttatagcttgaatactctgactgatgtccaaaggattgccatcagggatcttgcagaa
ttgggactagtcaaacagcagcagggtcgaacagatcgctggttcattcctacccaactg
gctactaatctctcagcaagtttgtcagattcatcatctaacaaagagggatttgtggtt
gtggagacaaactttcgaatgtatgcatactctacttccaaactgcactgtgaaattcta
cgccttttttcaagggtggagtatcaacttccaaacctcatcgtaggagctgttacaaaa
gaaagtatctatggtgcttttgagaatggaataactgctgagcagataatttcatttctt
agacaaaatgctcaccctcgtgttgctgacaagatacccactgtcccggagaatgtcaca
gatcagattaggctgtgggaaactgaccgcaacagggttgagatgattccatcacatctg
tacgaagattttcctagcaaggaatggtttgaacaatgctgtgattatgcaagggataat
gggtacttgctctgggaggactctaagagaatgagactgattgtacgaggggagttccac
cctgaaatgagggagttcctccgcaggcaaagatga

All links

Pathway (2)   
   KEGG PATHWAY (2)   
Genome (1)   
   KEGG GENOME (1)   
Gene (5)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   JGI-SBI (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (13)   

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