KEGG T01086: SORBI

Sorghum bicolor (sorghum): SORBI_07g020860

Entry

SORBI_07g020860 CDS T01086

Gene name

SORBIDRAFT_07g020860, Sb07g020860

Definition

hypothetical protein

Orthology

K12881

THO complex subunit 4

Organism

sbi Sorghum bicolor (sorghum)

Pathway

sbi03013	RNA transport
sbi03015	mRNA surveillance pathway
sbi03040	Spliceosome

Class

Genetic Information Processing; Transcription; Spliceosome [PATH:sbi03040]
Genetic Information Processing; Translation; RNA transport [PATH:sbi03013]
Genetic Information Processing; Translation; mRNA surveillance pathway [PATH:sbi03015]

SSDB

Motif

Pfam:

RRM_1 RRM_6 FoP_duplication RRM_5 RRM_3

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 272 aa
MSYYERRGGDRGSGRIQGSGGRGGHVLRGRSGLPPRGPLGVNSRPSARTIAKSFSRTKDM
TWRPDLFSDSMAASGIETGTKLYISNLDYGVSNEDIKELFSEVGHLKRFAVHYDGYGRPN
GTAEVVFTRRSDAIAALKRYNNVLLDGKAMKIEVIGSDLGLPMTPRINVVGASNGRATRT
VVMTPEFSQRGRGSSSRPLSNPSNRFNNRGGFQAGRGRGQFQARGRGRGQFQSRGRGRGQ
FQGRGRGRKPEKTADELDKDLESYHAEAMKTD

NT seq 819 nt +upstreamnt +downstreamnt
atgtcatattacgaaagaaggggtggagataggggtagtggccgtattcaaggaagtggt
gggcgaggtggacatgtcctgcgtggaagatcaggattgcctccccgaggacctcttggg
gttaactcccgtccatctgcacgcactattgctaagtcatttagcagaaccaaagacatg
acctggagacctgatctatttagtgatagcatggcggctagtggaatagaaactggtaca
aaattgtacatttcaaacttggactatggggtttctaatgaggatataaaggagctgttt
tcggaagttggccatttgaaacgctttgctgttcactatgatggttatggccgcccaaat
ggcactgcagaggtggtgtttacacgaaggagcgatgcaattgctgcactgaagcgttac
aataatgttctacttgatggaaaagctatgaagatagaagtcattggaagtgacttaggc
ttgcctatgacacctcgtataaatgtcgttggtgcttctaatggcagagctacaagaaca
gttgttatgacgcctgagtttagtcaacgtggcaggggttcaagcagtagacctctaagt
aatccaagcaacaggtttaacaaccgtggtggtttccaagctggtcgaggccgtggccag
ttccaggcccgtggcaggggccgtggccagttccagagccggggcaggggccgtggccag
ttccagggccgtggcagagggaggaagcctgagaagactgcagatgagttggataaagac
ctggaaagctatcacgcagaggccatgaaaaccgattga

All links

Pathway (3)   
   KEGG PATHWAY (3)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   JGI-SBI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

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