KEGG T01086: SORBI

Sorghum bicolor (sorghum): SORBI_09g003820

Entry

SORBI_09g003820 CDS T01086

Gene name

SORBIDRAFT_09g003820, Sb09g003820

Definition

hypothetical protein

Orthology

K03347

cullin 1

Organism

sbi Sorghum bicolor (sorghum)

Pathway

sbi04120	Ubiquitin mediated proteolysis
sbi04141	Protein processing in endoplasmic reticulum

Module

sbi_M00381

SCF-SKP2 complex

Class

Genetic Information Processing; Folding, sorting and degradation; Protein processing in endoplasmic reticulum [PATH:sbi04141]
Genetic Information Processing; Folding, sorting and degradation; Ubiquitin mediated proteolysis [PATH:sbi04120]

SSDB

Motif

Pfam:

Cullin Cullin_Nedd8 SF3a60_bindingd DUF3658 CO_deh_flav_C

Other DBs

NCBI-GI:

NCBI-GeneID:

JGI:

UniProt:

Position

AA seq 744 aa
MAGQERRTIDLEEGWAFMQKGITKLKNILEGKPEPQFSSEDYMMLYTTIYNMCTQKPPHD
YSQQLYDKYRESFEEYITSMVLPSLREKHDEFMLRELVQRWSNHKVMVRWLSRFFHYLDR
YFISRRSLTPLKEVGLTCFRELIYQEIKGQVKDAVIALIDKEREGEQIDRALLKNVLDIF
VEIGLGQMECYENDFEDFLLKDTTEYYSVKAQSWILEDSCPDYMIKAEECLKREKERVGH
YLHISSEQKLLEKVQNELLAQYATPLLEKEHSGCSALLRDDKVEDLSRMYRLFSKITRGL
EPISNMFKTHVTNEGTALVKQAEDSASNKKPEKKDMVGMQEQVFVWKIIELHDKYVAYVT
ECFQGHTLFHKALKEAFEVFCNKGVSGSSSAELLATFCDNILKKGCSEKLSDEAIEDALE
KVVRLLAYISDKDLFAEFYRKKLARRLLFDKSANDEHERSILTKLKQQCGGQFTSKMEGM
VTDLTVARDHQTKFEEFVAGHPELNPGIDLAVTVLTTGFWPSYKTFDINLPAEMVKCVEV
FKEFYQTRTKHRKLTWIYSLGTCNINAKFDAKPIELIVTTYQAALLLLFNGSDRLSYSEI
VTQLNLSDDDVVRLLHSLSCAKYKILTKEPANRSISPNDVFEFNSKFTDRMRRIKIPLPP
VDEKKKVVEDVDKDRRYAIDASIVRIMKSRKVMGHQQLVAECVEQLSRMFKPDFKAIKKR
IEDLITRDYLERDKDNANMYKYLA

NT seq 2235 nt +upstreamnt +downstreamnt
atggcggggcaggagcgtaggacaatcgatctggaggagggatgggccttcatgcagaag
ggcatcaccaagctgaagaacatcctcgagggcaagcccgagccgcagttcagctccgag
gactacatgatgctctacacgacgatatacaacatgtgcacgcagaagccgccacacgac
tactcgcagcagctttacgacaagtatagggagtcgttcgaggagtacatcacatccatg
gtactaccttcgttaagggagaaacatgacgagtttatgctgagggagctagtgcaaagg
tggtcaaaccataaagtcatggttcgctggctctcacgtttctttcattaccttgaccgg
tacttcatatcaaggaggtcacttaccccacttaaagaagttggccttacttgcttccga
gaattgatctatcaagagattaaagggcaagttaaagatgcagtgattgctctgatagac
aaagaacgtgagggtgaacagattgaccgggctctgttgaagaatgtcttggatattttt
gttgaaatcggtttgggtcaaatggagtgttatgagaatgacttcgaagatttcttgctc
aaggatactacagagtactactctgtcaaggctcaaagctggattcttgaggactcatgc
ccagattacatgattaaggctgaggagtgtttgaagcgggagaaggagcgagttggtcac
tatttgcatattagcagcgaacaaaagttgttggagaaagtgcaaaatgaattgcttgct
cagtatgcaaccccgctgttggagaaggagcattctggatgttctgctttgcttcgtgat
gataaggttgaggatctttctaggatgtataggctcttctccaaaatcacccgcggtctg
gagcctatttctaacatgttcaaaacgcatgttacaaatgagggcacagccttggtaaag
caagctgaagattctgctagtaataagaagccagagaagaaggatatggttggcatgcag
gaacaggtgttcgtgtggaaaatcattgagctgcatgacaaatatgtagcttatgtgaca
gaatgtttccagggacatacactcttccataaggcacttaaagaagcctttgaggtcttc
tgtaacaaaggtgtctctggcagttcaagtgctgagttgttggctaccttctgcgacaat
attctgaagaaaggttgcagtgaaaagctcagtgatgaagccattgaagatgcccttgag
aaggtggtgagattgctggcatacatcagtgataaagacctatttgccgagttctatagg
aagaagcttgcaagaagattactttttgacaaaagtgctaatgacgagcatgagagaagt
attctgacaaagctcaagcaacagtgtgggggacaatttacttcaaaaatggagggcatg
gttacagaccttactgtcgctagagatcaccagactaagtttgaagagtttgtagctgga
catccagagttgaatcctgggatagacttggctgttactgttttgacaacgggattctgg
ccaagctacaaaacttttgacataaaccttcctgctgagatggtgaaatgtgtagaggtt
ttcaaggagttctatcaaacaagaacaaagcacaggaagctgacatggatttactcattg
ggtacctgcaacatcaatgctaagtttgacgctaaacccattgagctcattgttacaaca
tatcaggctgcattgctactgctgttcaatggatccgacaggcttagttattctgagatt
gtaacacaattaaatctgtcagatgatgatgtagtgcgcttgcttcattcgctttcttgt
gcgaaatacaagatcctcaccaaggaaccggcaaatagatccatatcgcccaatgatgtt
tttgagttcaattcaaaatttactgacagaatgagaagaattaagattccactccctcct
gttgatgagaagaaaaaggttgttgaagatgttgacaaagacaggaggtatgcaattgat
gcatcaattgtgcgcattatgaagagccgcaaagttatgggtcatcaacagctggttgct
gaatgtgttgagcagctgagccgcatgtttaagcctgacttcaaagccataaagaagagg
attgaggatctcatcacaagggactacttggagcgcgacaaggacaatgcaaatatgtac
aaataccttgcctga

All links

Pathway (3)   
   KEGG PATHWAY (2)   
   KEGG MODULE (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (7)   
   KEGG ORTHOLOGY (1)   
   NCBI-Gene (1)   
   NCBI-GI (1)   
   UniGene (1)   
   JGI-SBI (1)   
   OC (1)   
   PGDBJ (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (5)   
   Pfam (5)   
All databases (19)   

Download RDF

DBGET integrated database retrieval system