KEGG   Shewanella baltica OS155: Sbal_4464
Entry
Sbal_4464         CDS       T00478                                 
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
sbl  Shewanella baltica OS155
Pathway
sbl03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:sbl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    Sbal_4464
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:sbl03021]
    Sbal_4464
   03400 DNA repair and recombination proteins [BR:sbl03400]
    Sbal_4464
Enzymes [BR:sbl01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     Sbal_4464
Transcription machinery [BR:sbl03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     Sbal_4464
DNA repair and recombination proteins [BR:sbl03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      Sbal_4464
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 RPOC_hybrid gerPA Apocytochr_F_C
Other DBs
NCBI-ProteinID: ABN64009
UniProt: A3DB96
Position
pSbal03:4255..8472
AA seq 1405 aa
MKDLLKFLKQQSKTEEFNGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR
IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIEPGMTSLERGQMLTEETYLDALEEYGDEFEAKM
GAEAVLELLRAIDLAKEIEQMREELPSINSETRRKKVTKRLKLMEAFYTSGNKPEWMILK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT
LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
RALMMSTNNILSPANGEPVITPSQDVVLGLYYTSRERINGRGEGMAFMSVAEVEKAYATG
AAELHARVKVRITETIIGDTGERTEQRRIVDTTVGRALLSLILPAGLSFDLVNQNMGKKQ
ISKLLNTCYRQLGLKDTVIFADQLMYTGFRFATISGASVGIDDMVIPDEKYTLVADAEAE
VLEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSTETVINRDGVEEKQASFN
SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDLVVIEDDCGTHEGLTMKPLIEGGDVVEPLRERVL
GRVVALDVFYPGTEDVLAPRNTLLDEAWCDKLEEYSIDEVIVRSVISCDTDFGVCAACYG
RDLARGHIINHGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENNVQVKNSGSLKL
HNAKHVTNSDGKLVIVSRSSELAVIDELGREKERYKVPYGTVLEKLEEAAVEAGDVIANW
DPHTHPIISEVAGSIKFVDMIDGVTMTRQTDELTGLSSIVILDVGQRGTAGKEMRPMIRL
LGANGADLMIPGTEVPAQYFLPGSAIVNLEDNAQINVGDALARIPQESSKTRDITGGLPR
VADLFEARKPKEPAILAEISGTISFGKETKGKRRLVITPADGGDHYEEMIPKWRNLNVFE
GEKVERGEVIADGPEAAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM
LRKCLITSAGDTDFLEGEQAEVSRVKIANRELIAQGKVPATFERELLGITKASLATESFI
SAASFQETTRVLTEAAVGGKSDQLRGLKENVIVGRLIPAGTGYAYHKTRNEARAKKNEPV
VVNKITASEAEQNLADLLNLAGSQD
NT seq 4218 nt   +upstreamnt  +downstreamnt
gtgaaagacttattaaagtttctgaaacagcaaagcaagactgaagaatttaacggcatc
aaaattggtctggcatcgcctgatctgatccgttcttggtcttttggtgaagttaagaag
ccagaaaccatcaactaccgtaccttcaagcctgagcgtgaaggtctgttctgtgcgcgt
atctttggcccagtcaaagattacgaatgtttgtgcggtaagtacaaacgtttgaagcac
cgtggtgttatttgtgaaaagtgtggcgttgaagtaacccaaactaaagtacgtcgtgag
cgtatgggtcacatcgaactggctagcccagttgcgcacatttggttcttaaaatcgcta
ccgtcacgtattggcttaatgctggatatgacgctgcgtgatatcgaacgcgtactgtat
tttgaatcatttgtggtgatcgagccaggcatgaccagccttgaacgtggccaaatgctg
acagaagaaacttatctggatgcattagaagaatacggtgatgagttcgaagctaaaatg
ggtgccgaagcagtgcttgaactgttacgtgctatcgatttagcgaaagaaatcgaacaa
atgcgtgaagaattaccttcaatcaactctgagactcgtcgcaagaaagtgactaaacgt
cttaagctgatggaagcattctacacttcaggcaacaagcctgagtggatgatcttaaaa
gtactgcctgtgttaccacctgacttacgtccgctggtaccgcttgatggcggccgcttc
gcgacttcagatcttaacgacctgtatcgccgcgtgatcaaccgtaacaaccgtttgaag
cgtctgttagatttagctgcgccagacattatcgtacgcaacgaaaagcgtatgttacaa
gaatctgttgatgcgctattagataacggtcgtcgtggtcgtgctattaccggttctaac
aagcgtcccctgaaatctttggccgatatgatcaaaggtaagcaaggtcgtttccgtcag
aacttattgggtaagcgcgtcgactattctggtcgttcggtaattaccgtaggtcctact
ctacgtctgcaccaatgtggtcttcctaagaagatggcactggaactgttcaagccattc
atctatggcaagctagaaggtcgtggcttagctactaccatcaaagcagctaagaagatg
gttgagcgtgaagtggcggaagtatgggacgttctggatgaagtgatccgcgaacatcca
gtgatgctcaaccgtgcaccaacactgcacagactgggtatccaagcgttcgaaccagta
ctgattgaaggtaaagcaatccagttacacccactcgtttgtgcggcatacaacgccgac
ttcgacggtgaccaaatggcggtacacgtaccgttaacactggaagcgcagcttgaagcc
cgtgccctgatgatgtctaccaacaacatcctgtcaccagccaacggcgagcctgttatc
acaccgtctcaagacgtggtattgggtctgtactacaccagccgtgagcgtattaacggc
cgtggtgaaggaatggcatttatgtctgttgctgaagttgaaaaagcttacgcaactggc
gctgctgaactgcatgcccgcgttaaagtacgtatcactgaaaccattattggtgacact
ggtgaacgtactgaacaacgccgtattgttgatacgactgtgggtcgtgctctgctgtca
cttattctgccagcaggtttgtcatttgatctggttaaccagaacatgggcaaaaagcag
atctctaaactgttgaacacttgttatcgtcaactgggtctgaaagatactgttatcttc
gctgaccaattgatgtataccggtttccgttttgcaaccatttctggtgcctctgtaggt
atcgatgacatggttattccagacgagaaatacaccttagttgctgatgcagaagcggaa
gttcttgaaattcaagagcagttccaatctggtctagttacagccggtgagcgttacaac
aaagttatcgatatctgggcaagtgccaacgaaaaagtttctaaagctatgatggaaaac
ctgtcaactgagacagtgattaaccgtgatggtgttgaagagaaacaagcctcgtttaac
agtatctatatgatggctgactcaggcgctcgtggtagtgccgcacagatccgtcagttg
gcgggtatgcgtggtctgatggctaagccagatggctcaatcatcgaaacgccaattacc
gctaacttccgtgaaggtctaaacgtactccagtactttatttctactcacggtgcgcgt
aaaggtctagccgatacggcattgaagacagcgaactcgggttacctgactcgtcgtctt
gtagacgttgcacaagatttagtggttatcgaagacgattgtggtactcacgaaggtcta
accatgaaaccgctgattgaaggtggtgatgtggttgagccgttacgtgaacgcgtactg
ggtcgtgtggttgcgcttgatgtgttctatccaggcactgaagacgtactcgcaccacgt
aacacgctactcgacgaagcctggtgtgacaagttagaagaatattcaatcgacgaagtg
attgtacgttctgttatttcttgtgataccgatttcggtgtgtgtgcagcctgttacggt
cgtgacttggctcgtggtcatatcattaaccacggtgaagcaatcggtgttgtggcagca
cagtctatcggtgaaccaggtacacagttaacgatgcgtacgttccacatcggtggtgcg
gcatcaagagcgtctgcagaaaacaatgtccaagtgaaaaactcgggttcattgaaactg
cataatgctaagcatgttactaacagtgacggcaaactggttatcgtttctcgttcttct
gaactggccgttattgacgagctgggtcgtgagaaagagcgttataaagtgccatacggt
actgtgctcgagaagctagaagaagcagctgttgaagcgggcgatgttatcgctaactgg
gatccacatactcacccaatcatttctgaagtggcgggtagtatcaagttcgtagacatg
attgacggtgtcactatgacacgtcaaacagacgaactaacgggtctgtcatcaatcgtg
atccttgacgttggtcagcgtggtactgcgggtaaagaaatgcgcccaatgatccgtctg
cttggcgctaatggtgctgacttgatgatccctggtactgaagtaccagcacagtacttc
ttacctggtagtgcgatcgttaacttggaagataacgcgcaaatcaacgtgggtgacgct
ttagctcgtattcctcaggaatcgtctaaaacacgcgacatcaccggtggtctgccacgc
gttgctgacttgttcgaagcgcgtaagccaaaagagcctgctattctggcggaaatctct
ggtaccatctcgtttggtaaagagaccaaaggtaagcgtcgtttggtgattacacctgct
gatggcggcgatcattatgaagagatgatccctaagtggcgtaacttaaacgtgttcgaa
ggtgaaaaagtcgaacgtggtgaagttatcgctgacggtccagaagcggcacacgacatt
ctgcgtcttcgtggtatccacaacgtagcaaactacattgtgaacgaagtacaggacgtt
taccgtctgcaaggcgtgaagatcaacgataagcatatcgaagtgatcatccgtcaaatg
ctgcgtaagtgtcttatcacttctgccggtgacactgacttcctcgaaggggaacaagct
gaagtgtcacgcgtgaagatcgctaaccgcgaactgatcgcccaaggtaaagtgcctgcg
actttcgaacgtgaactactgggtattactaaagcatctctggcaacagaatcctttatc
tcagcagcatcgttccaagaaactacgcgcgtactgaccgaagctgccgtaggtggtaag
agcgatcaattacgtggtctgaaagaaaacgttatcgttggccgactgatcccagccggt
actggttacgcttatcataagactcgtaatgaagcgcgtgcgaagaaaaacgaacctgta
gtagtgaataagatcactgcaagtgaagccgaacagaacttggccgatctcttaaacctg
gctggtagccaagattaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (9)   
   Pfam (9)   
All databases (20)   

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