KEGG T01725: Sbal678

Shewanella baltica OS678: Sbal678_2162

Entry

Sbal678_2162      CDS       T01725

Name

(GenBank) excinuclease ABC, B subunit

K03702

excinuclease ABC subunit B

Organism

sbt Shewanella baltica OS678

Pathway

sbt03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:sbt00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03420 Nucleotide excision repair
    Sbal678_2162
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:sbt03400]
    Sbal678_2162
DNA repair and recombination proteins [BR:sbt03400]
Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Sbal678_2162
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     Supressor
      Sbal678_2162

SSDB

Motif

Pfam:

UvrB_inter Helicase_C UvrB UVR ResIII DEAD AAA_22 AAA_30 DUF724 Ish1 AAA Kinesin UB2H

Other DBs

NCBI-ProteinID:

ADT94319

Position

2524816..2526822

AA seq 668 aa
MSESVFQLESQFAPAGDQPTAIAKLVDGLEAGLACQTLLGVTGSGKTFTIANVIQKLGRP
TIIMAPNKTLAAQLYGEMKEFFPHNAVEYFVSYYDYYQPEAYVPASNTFIEKDASVNAHI
EQMRLSATKALLERKDVVLIASVSAIYGLGDPDSYLKMLLHLRQGDVMGQRDILIRLSEL
QYKRNDIELQRGTYRVRGEVIDVFPADSERNAIRVELFDDEIERLSEFDPLTGHIIKRIA
RTTVYPKTHYVTPREKIIAATEFIKEELRERKQFLLDNNKLIEAQRIHERVQYDVEMMVE
LGYCSGIENYSRYLSGRAPGEGPPTLLDYLPADGLLIIDESHVTVPQIGAMYKGDRSRKT
TLVEYGFRLPSALDNRPLKFEEFEQLMPQTIYVSATPSVYELEKSEGEIAEQVVRPTGLL
DPELEVRPVGTQVDDLLSEIAKRVAVNERVLVTTLTKRMSEDLTEYLDEHGVKVRYLHSD
IDTVERVEIIRDLRLGKFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTI
GRAARNVNGKVILYADRITNSMAKAIGETDRRRERQRAHNLKHGITPKGVVKRITDVMDV
DDGRDSKAVYGKVAEPKSHYHKADATELSHQIDQLEKKMHEYARNLEFEQAAAMRDEVKH
LRDLLIKA

NT seq 2007 nt +upstreamnt +downstreamnt
gtgtcagaatctgtttttcagcttgaatcgcaattcgcccccgcaggcgaccaacctaca
gcgatagccaaattagtcgatggactcgaagcgggtttagcttgccaaaccttactcggg
gtgaccggctcaggtaaaaccttcacgattgctaatgtaatccaaaagttaggtcgcccc
acgattattatggcgcccaataaaaccttggcggcgcagctttatggcgagatgaaagag
ttctttccccataatgcggttgagtattttgtctcttactacgattactatcagccagaa
gcctatgtgcctgcatcgaatacctttatcgagaaagatgcgtcggttaatgcccatata
gagcaaatgcgcctgtcggcgacgaaggcgctactagagcgtaaagatgtggtgctcatc
gcttctgtgtcggccatttatggtttgggcgatcccgactcctatttaaaaatgttgctg
cacctacgccaaggcgatgtgatggggcagcgtgatatcttaattcgtctcagtgaattg
cagtataaacgcaatgatatcgagctacagcgcggcacctatcgcgtgcgtggtgaagtg
attgatgttttccctgccgattctgagcgtaatgctattcgcgttgaattgttcgacgat
gagattgagcgtttaagcgagtttgatccgttaaccggccatatcattaagcgcatcgcc
cgtacaacggtttaccctaagactcactatgtgacgccgcgggaaaaaatcattgccgcc
actgagttcattaaagaagagctgcgtgagcgtaagcaatttctactcgataacaacaag
ttaattgaagcccagcgtatccatgagcgagtgcaatacgatgtggaaatgatggtggag
ttaggttactgctctggcatcgaaaactactcgcgctatttatctggtcgcgcaccgggg
gaagggccgccaaccttactcgactatttgcccgctgacggtctattaattatcgacgaa
tcccatgtgactgtgccgcaaatcggcgccatgtacaaaggtgaccgttctcgtaaaacc
acactggtggaatacggtttccgcttaccatcagccttagataaccgaccgctcaagttt
gaagagtttgagcaattgatgccgcaaaccatttatgtgtcggcgacaccgagtgtctac
gagctggaaaaaagcgaaggtgagattgccgagcaggtcgtacggccaacgggtttactc
gatcctgaattagaagtgcgtcctgtcgggactcaagtggacgatttattgtctgaaatc
gctaagcgcgtcgctgttaacgagcgggtgttagtgacgacgctgaccaagcgtatgtcg
gaggatttgactgaatacctcgacgagcatggggtcaaagtgcgttatttgcactcggac
atagacacagtcgaacgggtggagatcatccgcgatctgcgtttaggtaagtttgatgtg
ttggttgggatcaacttattgcgtgaaggcttagacatgccagaagtgtcattggtgtgt
attttagatgcggataaagagggcttcttgcgctcagaacgctcgcttatccaaaccatt
ggccgcgctgcgcgtaacgtcaatggcaaagtaatcctctatgccgatcgcattaccaat
tcgatggcgaaggccattggtgaaactgaccgccgacgtgaacgccagcgcgcgcacaac
ttaaagcacggcatcacacctaagggcgtggttaaacggatcaccgatgtgatggatgtg
gatgatggccgcgacagtaaagctgtctatggcaaagtggcagagcctaagtcccattac
cataaggctgatgcgactgagttgagccatcaaatcgatcagcttgagaagaaaatgcac
gaatatgcgcgcaacttagagttcgaacaagcagcggcgatgcgtgatgaagtcaagcat
ttgcgggacttgttgatcaaggcctag

All links

Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein domain (13)   
   Pfam (13)   
All databases (20)   

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